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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037165 through 18771 annotations produced 1 hits



(CG11437):

Annotation Number : CG11437
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037165
Gbrowse : chr3L:22461963-22462960 (+) // 100.0 //
Probeset : 1635276_at
Accessions : protein= NP_649393;, nucleotide= NM_141136;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008195 // phosphatidate phosphatase activity /
FlyMine data for FBgn0037165.
BDGP gene expression has embryonic in situ data for CG11437: 18 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0037165 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037165 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40Down
Head9 ± 10 of 4 2.30Up
Eye4 ± 10 of 4 1.07None
Thoracicoabdominal ganglion2 ± 00 of 4 0.70None
Salivary gland6 ± 20 of 4 1.71None
Crop4 ± 20 of 4 1.00None
Midgut4 ± 10 of 4 1.20None
Tubule3 ± 10 of 4 0.90None
Hindgut1 ± 00 of 4 0.40None
Heart4 ± 00 of 4 1.18None
Fat body2 ± 10 of 4 0.65None
Ovary1 ± 00 of 4 0.30None
Testis19 ± 24 of 4 4.90Up
Male accessory glands7 ± 10 of 4 1.90None
Virgin spermatheca2 ± 00 of 4 0.64None
Mated spermatheca3 ± 00 of 4 0.81None
Adult carcass24 ± 00 of 4 6.10Up
Larval CNS2 ± 20 of 4 0.60None
Larval Salivary gland2 ± 10 of 4 0.73None
Larval midgut1 ± 00 of 4 0.39None
Larval tubule4 ± 10 of 4 1.10None
Larval hindgut7 ± 10 of 4 1.96Up
Larval fat body1 ± 00 of 4 0.30None
Larval trachea1 ± 10 of 4 0.40None
Larval carcass7 ± 20 of 4 1.90None
S2 cells (growing)1 ± 00 of 4 0.42None
Whole fly4 ± 00 of 4

Looking for FBgn0037165. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime