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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037171 through 18771 annotations produced 2 hits



(CG14459):

Annotation Number : S.C3L002841
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037171
Gbrowse : chr3L:22586180-22599218 (-) // 100.0 //
Probeset : 1638674_at
Accessions : protein= NP_001097662;, nucleotide= NM_001104192;
FlyMine data for FBgn0037171.
VDRC has 2 RNAi stocks for FBgn0037171 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 4.50Up
Head0 ± 00 of 4 0.90None
Eye1 ± 00 of 4 1.79None
Thoracicoabdominal ganglion0 ± 00 of 4 0.60None
Salivary gland9 ± 40 of 4 9.87None
Crop2 ± 10 of 4 2.90None
Midgut0 ± 00 of 4 0.90None
Tubule3 ± 00 of 4 3.10Up
Hindgut0 ± 00 of 4 0.80None
Heart1 ± 00 of 4 2.00None
Fat body1 ± 00 of 4 1.66None
Ovary0 ± 00 of 4 1.00None
Testis1 ± 00 of 4 1.40None
Male accessory glands1 ± 00 of 4 1.90None
Virgin spermatheca2 ± 00 of 4 2.58None
Mated spermatheca2 ± 10 of 4 2.13None
Adult carcass0 ± 00 of 4 0.60None
Larval CNS1 ± 10 of 4 1.05None
Larval Salivary gland3 ± 20 of 4 3.24None
Larval midgut1 ± 00 of 4 1.42None
Larval tubule0 ± 00 of 4 0.70None
Larval hindgut0 ± 00 of 4 0.61None
Larval fat body6 ± 10 of 4 6.60None
Larval trachea3 ± 20 of 4 3.53None
Larval carcass1 ± 00 of 4 1.71None
S2 cells (growing)1 ± 00 of 4 1.95None
Whole fly1 ± 00 of 4



(CG14459):

Annotation Number : CG14459
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037171
Gbrowse : chr3L:22576013-22576753 (-) // 100.0 //
Probeset : 1624921_at
Accessions : protein= NP_001097662;, nucleotide= NM_001104192;
FlyMine data for FBgn0037171.
VDRC has 2 RNAi stocks for FBgn0037171 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 24 of 4 5.20Up
Head5 ± 21 of 4 1.50None
Eye2 ± 10 of 4 0.75None
Thoracicoabdominal ganglion21 ± 21 of 4 5.50Up
Salivary gland13 ± 40 of 4 3.64None
Crop5 ± 10 of 4 1.30None
Midgut1 ± 00 of 4 0.50None
Tubule2 ± 00 of 4 0.70Down
Hindgut4 ± 10 of 4 1.20None
Heart2 ± 10 of 4 0.70None
Fat body2 ± 20 of 4 0.75None
Ovary2 ± 00 of 4 0.70None
Testis2 ± 00 of 4 0.50None
Male accessory glands10 ± 31 of 4 2.80None
Virgin spermatheca1 ± 00 of 4 0.33None
Mated spermatheca2 ± 10 of 4 0.65None
Adult carcass9 ± 40 of 4 2.40None
Larval CNS4 ± 20 of 4 1.25None
Larval Salivary gland3 ± 00 of 4 0.86None
Larval midgut1 ± 10 of 4 0.49None
Larval tubule2 ± 00 of 4 0.50None
Larval hindgut1 ± 00 of 4 0.47None
Larval fat body5 ± 20 of 4 1.40None
Larval trachea0 ± 00 of 4 0.12Down
Larval carcass2 ± 00 of 4 0.76None
S2 cells (growing)1 ± 00 of 4 0.42None
Whole fly3 ± 10 of 4

Looking for FBgn0037171. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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