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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037174 through 18771 annotations produced 2 hits



(CG14457):

Annotation Number : S.C3L002844
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037174
Gbrowse : chr3L:22671732-22672456 (+) // 100.0 //
Probeset : 1627145_at
Accessions : protein= NP_001014600; /// NP_649401;, nucleotide= NM_001014600; /// NM_141144;
FlyMine data for FBgn0037174.
VDRC has 2 RNAi stocks for FBgn0037174 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 1.00None
Head2 10 of 4 0.40None
Eye1 00 of 4 0.19None
Thoracicoabdominal ganglion4 20 of 4 0.80None
Salivary gland2 00 of 4 0.49None
Crop3 10 of 4 0.50None
Midgut79 24 of 413.80Up
Tubule2 00 of 4 0.40Down
Hindgut10 12 of 4 1.80None
Heart2 10 of 4 0.38None
Fat body1 00 of 4 0.23None
Ovary0 00 of 4 0.10None
Testis21 14 of 4 3.70Up
Male accessory glands1 00 of 4 0.20None
Virgin spermatheca2 10 of 4 0.45None
Mated spermatheca1 00 of 4 0.18None
Adult carcass2 00 of 4 0.40None
Larval CNS1 10 of 4 0.24None
Larval Salivary gland1 00 of 4 0.23None
Larval midgut51 04 of 4 8.84Up
Larval tubule1 00 of 4 0.20None
Larval hindgut5 00 of 4 0.96None
Larval fat body4 20 of 4 0.80None
Larval trachea2 10 of 4 0.43None
Larval carcass1 00 of 4 0.20None
S2 cells (growing)1 00 of 4 0.22None
Whole fly5 21 of 4



(CG14457):

Annotation Number : CG14457
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037174
Gbrowse : chr3L:22663055-22673134 (+) // 100.0 //
Probeset : 1631981_at
Accessions : protein= NP_001014600; /// NP_649401;, nucleotide= NM_001014600; /// NM_141144;
FlyMine data for FBgn0037174.
VDRC has 2 RNAi stocks for FBgn0037174 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 10 of 4 0.60Down
Head5 00 of 4 0.50Down
Eye3 00 of 4 0.25Down
Thoracicoabdominal ganglion3 10 of 4 0.30Down
Salivary gland7 50 of 4 0.62None
Crop2 10 of 4 0.20Down
Midgut150 74 of 411.90Up
Tubule5 00 of 4 0.40Down
Hindgut20 14 of 4 1.60Up
Heart2 10 of 4 0.23Down
Fat body4 20 of 4 0.34Down
Ovary3 10 of 4 0.30Down
Testis31 34 of 4 2.50Up
Male accessory glands4 10 of 4 0.40Down
Virgin spermatheca3 10 of 4 0.26Down
Mated spermatheca7 00 of 4 0.55Down
Adult carcass4 10 of 4 0.30Down
Larval CNS2 10 of 4 0.18Down
Larval Salivary gland3 10 of 4 0.23Down
Larval midgut143 44 of 411.30Up
Larval tubule5 00 of 4 0.40Down
Larval hindgut6 11 of 4 0.47Down
Larval fat body3 10 of 4 0.30Down
Larval trachea6 20 of 4 0.48Down
Larval carcass3 10 of 4 0.29Down
S2 cells (growing)3 10 of 4 0.31Down
Whole fly12 12 of 4

Looking for FBgn0037174. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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