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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037177 through 18771 annotations produced 2 hits



(CG14454):

Annotation Number : CG14454
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037177
Gbrowse : chr3L:22684764-22685620 (-) // 100.0 //
Probeset : 1625865_at
Accessions : protein= NP_649404; /// NP_730733;, nucleotide= NM_141147; /// NM_168954;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037177.
BioGrid reports that CG14454 interacts with CG15861 CG2199 CG6459 .
VDRC has 3 RNAi stocks for FBgn0037177 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.60None
Head5 ± 20 of 4 0.90None
Eye4 ± 20 of 4 0.80None
Thoracicoabdominal ganglion2 ± 10 of 4 0.50None
Salivary gland12 ± 30 of 4 2.27None
Crop4 ± 00 of 4 0.80None
Midgut2 ± 00 of 4 0.40None
Tubule3 ± 10 of 4 0.60None
Hindgut3 ± 10 of 4 0.70None
Heart4 ± 10 of 4 0.75None
Fat body5 ± 10 of 4 1.00None
Ovary3 ± 00 of 4 0.60None
Testis3 ± 00 of 4 0.60None
Male accessory glands1 ± 00 of 4 0.30None
Virgin spermatheca2 ± 10 of 4 0.46None
Mated spermatheca2 ± 00 of 4 0.43None
Adult carcass2 ± 00 of 4 0.40None
Larval CNS3 ± 10 of 4 0.63None
Larval Salivary gland2 ± 00 of 4 0.45None
Larval midgut3 ± 10 of 4 0.64None
Larval tubule2 ± 00 of 4 0.50None
Larval hindgut3 ± 00 of 4 0.70None
Larval fat body5 ± 10 of 4 1.00None
Larval trachea1 ± 00 of 4 0.21None
Larval carcass4 ± 10 of 4 0.81None
S2 cells (growing)4 ± 10 of 4 0.76None
Whole fly5 ± 10 of 4



/// (CG14454 /// CG32453):

Annotation Number : CG32453
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037177 /// FBgn0052453
Gbrowse : chr3L:22690338-22690772 (+) // 100.0 //
Probeset : 1631673_s_at
Accessions : protein= NP_649404; /// NP_730733;, nucleotide= NM_141147; /// NM_168954;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037177 /// FBgn0052453.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 10 of 4 0.50None
Head21 ± 23 of 4 0.80None
Eye35 ± 20 of 4 1.35None
Thoracicoabdominal ganglion21 ± 13 of 4 0.80None
Salivary gland70 ± 40 of 4 2.65Up
Crop32 ± 11 of 4 1.20None
Midgut32 ± 22 of 4 1.20None
Tubule27 ± 01 of 4 1.00None
Hindgut24 ± 21 of 4 0.90None
Heart23 ± 20 of 4 0.87None
Fat body36 ± 100 of 4 1.37None
Ovary17 ± 20 of 4 0.70None
Testis14 ± 01 of 4 0.60None
Male accessory glands33 ± 30 of 4 1.30None
Virgin spermatheca38 ± 21 of 4 1.43None
Mated spermatheca41 ± 12 of 4 1.55None
Adult carcass38 ± 82 of 4 1.40None
Larval CNS22 ± 13 of 4 0.84None
Larval Salivary gland42 ± 31 of 4 1.58None
Larval midgut49 ± 11 of 4 1.85Up
Larval tubule34 ± 14 of 4 1.30None
Larval hindgut20 ± 30 of 4 0.78None
Larval fat body25 ± 33 of 4 1.00None
Larval trachea39 ± 61 of 4 1.50None
Larval carcass44 ± 20 of 4 1.67Up
S2 cells (growing)23 ± 20 of 4 0.89None
Whole fly26 ± 52 of 4

Looking for FBgn0037177. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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