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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037179 through 18771 annotations produced 1 hits



(CG14453):

Annotation Number : CG14453
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037179
Gbrowse : chr3L:22687194-22687748 (+) // 98.93 //
Probeset : 1629450_at
Accessions : protein= NP_649406;, nucleotide= NM_141149;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037179.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.20None
Head4 00 of 4 0.30None
Eye2 00 of 4 0.14None
Thoracicoabdominal ganglion3 00 of 4 0.20None
Salivary gland9 20 of 4 0.61None
Crop3 10 of 4 0.30None
Midgut2 10 of 4 0.20None
Tubule2 00 of 4 0.20Down
Hindgut1 00 of 4 0.10None
Heart2 00 of 4 0.16None
Fat body10 10 of 4 0.68None
Ovary0 00 of 4 0.00None
Testis5 03 of 4 0.40None
Male accessory glands6 11 of 4 0.40None
Virgin spermatheca8 31 of 4 0.57None
Mated spermatheca6 20 of 4 0.43None
Adult carcass1 00 of 4 0.10None
Larval CNS2 10 of 4 0.19None
Larval Salivary gland2 10 of 4 0.16None
Larval midgut4 10 of 4 0.27None
Larval tubule3 10 of 4 0.20None
Larval hindgut1 00 of 4 0.11None
Larval fat body6 20 of 4 0.40None
Larval trachea5 10 of 4 0.34None
Larval carcass4 00 of 4 0.31None
S2 cells (growing)1 00 of 4 0.09None
Whole fly15 53 of 4

Looking for FBgn0037179. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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