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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037180 through 18771 annotations produced 1 hits


/// (CG12546 /// CG14452):

Annotation Number : CG14452
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037178 /// FBgn0037180
Gbrowse : chr3L:22689051-22689536 (+) // 100.0 // /// chr3L:22686422-22686898 (-) // 98.14 //
Probeset : 1633411_s_at
Accessions : protein= NP_649405; /// NP_649407;, nucleotide= NM_141148; /// NM_141150;
FlyMine data for FBgn0037178 /// FBgn0037180.
BioGrid reports that CG14452 interacts with CG17945 CG32635 CG6357 CG6459 Dmel CR14499 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland239 ± 224 of 4 4.11Up
Crop14 ± 03 of 4 0.20None
Midgut2 ± 10 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut13 ± 41 of 4 0.20Down
Heart0 ± 00 of 4 0.01Down
Fat body3 ± 40 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis80 ± 14 of 4 1.40None
Male accessory glands10 ± 20 of 4 0.20Down
Virgin spermatheca24 ± 112 of 4 0.41None
Mated spermatheca43 ± 114 of 4 0.75None
Adult carcass9 ± 30 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.05Down
Larval Salivary gland20 ± 24 of 4 0.36None
Larval midgut4 ± 10 of 4 0.07Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.05Down
Larval fat body10 ± 41 of 4 0.20Down
Larval trachea8 ± 14 of 4 0.15Down
Larval carcass3 ± 00 of 4 0.05Down
S2 cells (growing)4 ± 10 of 4 0.08Down
Whole fly58 ± 144 of 4

Looking for FBgn0037180. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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