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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037185 through 18771 annotations produced 2 hits



/// (CG11367 /// CG32454):

Annotation Number : CG11367
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037185
Gbrowse : chr3L:22721206-22726548 (+) // 100.0 //
Probeset : 1625990_at
Accessions : protein= NP_649412;, nucleotide= NM_141155;
FlyMine data for FBgn0037185.
BDGP gene expression has embryonic in situ data for CG11367: 10 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0037185 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain124 54 of 4 0.70Down
Head93 144 of 4 0.60Down
Eye102 64 of 4 0.61Down
Thoracicoabdominal ganglion148 124 of 4 0.90None
Salivary gland345 94 of 4 2.06Up
Crop59 24 of 4 0.40Down
Midgut90 24 of 4 0.50Down
Tubule24 13 of 4 0.10Down
Hindgut139 64 of 4 0.80Down
Heart37 04 of 4 0.23Down
Fat body53 84 of 4 0.32Down
Ovary341 144 of 4 2.00Up
Testis133 24 of 4 0.80Down
Male accessory glands1621 654 of 4 9.70Up
Virgin spermatheca67 64 of 4 0.40Down
Mated spermatheca59 24 of 4 0.36Down
Adult carcass52 24 of 4 0.30Down
Larval CNS182 154 of 4 1.09None
Larval Salivary gland450 284 of 4 2.69Up
Larval midgut222 104 of 4 1.33Up
Larval tubule55 54 of 4 0.30Down
Larval hindgut67 24 of 4 0.40Down
Larval fat body121 84 of 4 0.70Down
Larval trachea97 114 of 4 0.58Down
Larval carcass140 94 of 4 0.84None
S2 cells (growing)125 34 of 4 0.75Down
Whole fly167 74 of 4



/// (CG11367 /// CG32454):

Annotation Number : CG32454
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260481
Gbrowse : chr3L:22722865-22724513 (+) // 100.0 //
Probeset : 1630293_at
Accessions : protein= NP_730740;, nucleotide= NM_168959;
Interpro : 0004177 // aminopeptidase activity // inferred from electronic annotation /// 0008235 // metalloexopeptidase activity //
FlyMine data for FBgn0260481.
VDRC has 4 RNAi stocks for FBgn0260481 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.20Down
Head1 00 of 4 0.10Down
Eye3 10 of 4 0.25Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland2 10 of 4 0.18Down
Crop0 00 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut1 00 of 4 0.10Down
Heart1 00 of 4 0.12Down
Fat body2 20 of 4 0.14Down
Ovary1 00 of 4 0.10Down
Testis278 114 of 418.00Up
Male accessory glands3 10 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.08Down
Mated spermatheca2 00 of 4 0.14Down
Adult carcass1 00 of 4 0.10Down
Larval CNS2 10 of 4 0.14Down
Larval Salivary gland2 00 of 4 0.13Down
Larval midgut1 00 of 4 0.07Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.07Down
Larval fat body23 111 of 4 1.50None
Larval trachea5 40 of 4 0.35Down
Larval carcass1 00 of 4 0.07Down
S2 cells (growing)0 00 of 4 0.06Down
Whole fly15 22 of 4

Looking for FBgn0037185. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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