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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037195 through 18771 annotations produced 1 hits



(CG11226):

Annotation Number : CG11226
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037195
Gbrowse : chr3L:22830167-22831271 (+) // 100.0 //
Probeset : 1627333_at
Accessions : protein= NP_649420;, nucleotide= NM_141163;
FlyMine data for FBgn0037195.
BDGP gene expression has embryonic in situ data for CG11226: 2 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037195 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland4 ± 00 of 4 0.09Down
Crop2 ± 00 of 4 0.00Down
Midgut5 ± 20 of 4 0.10Down
Tubule31 ± 52 of 4 0.60Down
Hindgut2 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.03Down
Fat body2 ± 00 of 4 0.05Down
Ovary0 ± 00 of 4 0.00Down
Testis483 ± 174 of 4 9.80Up
Male accessory glands45 ± 44 of 4 0.90None
Virgin spermatheca14 ± 42 of 4 0.29Down
Mated spermatheca11 ± 30 of 4 0.23Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.02Down
Larval Salivary gland5 ± 20 of 4 0.11Down
Larval midgut6 ± 10 of 4 0.13Down
Larval tubule8 ± 30 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body45 ± 242 of 4 0.90None
Larval trachea0 ± 00 of 4 0.02Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly49 ± 24 of 4

Looking for FBgn0037195. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime