Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037202 through 18771 annotations produced 1 hits



Ssl1 (Ssl1):

Annotation Number : CG11115
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037202
Gbrowse : chr3L:22872188-22874067 (+) // 100.0 //
Probeset : 1638161_at
Accessions : protein= NP_649427;, nucleotide= NM_141170;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0037202.
BDGP gene expression has embryonic in situ data for Ssl1: 4 pix of staining in 1 body parts.
BioGrid reports that CG11115 interacts with CG7347 .
TRiP has 1 RNAi stocks for FBgn0037202 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037202 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain129 24 of 4 0.80Down
Head69 64 of 4 0.50Down
Eye43 44 of 4 0.28Down
Thoracicoabdominal ganglion123 44 of 4 0.80Down
Salivary gland52 34 of 4 0.34Down
Crop78 34 of 4 0.50Down
Midgut58 34 of 4 0.40Down
Tubule86 34 of 4 0.60Down
Hindgut72 34 of 4 0.50Down
Heart56 24 of 4 0.37Down
Fat body64 54 of 4 0.42Down
Ovary250 54 of 4 1.60Up
Testis122 34 of 4 0.80Down
Male accessory glands127 104 of 4 0.80None
Virgin spermatheca76 44 of 4 0.50Down
Mated spermatheca93 24 of 4 0.61Down
Adult carcass58 64 of 4 0.40Down
Larval CNS246 204 of 4 1.60Up
Larval Salivary gland201 84 of 4 1.31Up
Larval midgut52 14 of 4 0.34Down
Larval tubule76 24 of 4 0.50Down
Larval hindgut104 34 of 4 0.68Down
Larval fat body60 24 of 4 0.40Down
Larval trachea205 154 of 4 1.34Up
Larval carcass129 24 of 4 0.84Down
S2 cells (growing)191 54 of 4 1.24Up
Whole fly153 64 of 4

Looking for FBgn0037202. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime