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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037205 through 18771 annotations produced 1 hits


(CG11133):

Annotation Number : CG11133
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037205
Gbrowse : chr3L:22895033-22898570 (+) // 100.0 //
Probeset : 1627806_at
Accessions : protein= NP_649430;, nucleotide= NM_141173;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from elect
FlyMine data for FBgn0037205.
BDGP gene expression has embryonic in situ data for CG11133: 4 pix of staining in 1 body parts.
BioGrid reports that CG11133 interacts with CG4771 .
VDRC has 3 RNAi stocks for FBgn0037205 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland12 ± 40 of 4 0.30Down
Crop0 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.05Down
Fat body9 ± 30 of 4 0.23Down
Ovary107 ± 54 of 4 2.60Up
Testis16 ± 14 of 4 0.40Down
Male accessory glands13 ± 22 of 4 0.30Down
Virgin spermatheca7 ± 21 of 4 0.17Down
Mated spermatheca5 ± 22 of 4 0.14Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS5 ± 11 of 4 0.14Down
Larval Salivary gland3 ± 10 of 4 0.07Down
Larval midgut3 ± 20 of 4 0.08Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.07Down
Larval fat body5 ± 31 of 4 0.10Down
Larval trachea4 ± 10 of 4 0.10Down
Larval carcass3 ± 10 of 4 0.08Down
S2 cells (growing)80 ± 24 of 4 1.94Up
Whole fly41 ± 54 of 4

Looking for FBgn0037205. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime