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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037213 through 18771 annotations produced 1 hits


Annotation Number : CG12581
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037213
Gbrowse : chr3R:379-10200 (+) // 100.0 //
Probeset : 1633280_s_at
Accessions : protein= NP_649435; /// NP_730781;, nucleotide= NM_141178; /// NM_164313;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037213.
BDGP gene expression has embryonic in situ data for CG12581: 20 pix of staining in 22 body parts.
BioGrid reports that CG12581 interacts with CG3085 CG7392 CG8869 CG6457 CG6483 CG7987 CG31034 CG31362 .
VDRC has 4 RNAi stocks for FBgn0037213 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 04 of 4 0.10Down
Head222 114 of 4 2.20Up
Eye169 84 of 4 1.68Up
Thoracicoabdominal ganglion9 22 of 4 0.10Down
Salivary gland135 44 of 4 1.34Up
Crop900 174 of 4 8.90Up
Midgut17 20 of 4 0.20Down
Tubule22 13 of 4 0.20Down
Hindgut417 34 of 4 4.10Up
Heart28 14 of 4 0.28Down
Fat body49 54 of 4 0.49Down
Ovary37 24 of 4 0.40Down
Testis8 10 of 4 0.10Down
Male accessory glands420 134 of 4 4.20Up
Virgin spermatheca189 74 of 4 1.88Up
Mated spermatheca218 234 of 4 2.17Up
Adult carcass260 94 of 4 2.60Up
Larval CNS81 64 of 4 0.81Down
Larval Salivary gland81 74 of 4 0.81None
Larval midgut29 34 of 4 0.29Down
Larval tubule50 64 of 4 0.50Down
Larval hindgut316 74 of 4 3.14Up
Larval fat body169 124 of 4 1.70Up
Larval trachea522 314 of 4 5.18Up
Larval carcass227 64 of 4 2.25Up
S2 cells (growing)3 00 of 4 0.03Down
Whole fly100 34 of 4

Looking for FBgn0037213. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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