FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037213 through 18771 annotations produced 1 hits

(CG12581):

Annotation Number : CG12581
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037213
Gbrowse : chr3R:379-10200 (+) // 100.0 //
Probeset : 1633280_s_at
Accessions : protein= NP_649435; /// NP_730781;, nucleotide= NM_141178; /// NM_164313;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037213.
BDGP gene expression has embryonic in situ data for CG12581: 20 pix of staining in 22 body parts.
BioGrid reports that CG12581 interacts with CG3085 CG7392 CG8869 CG6457 CG6483 CG7987 CG31034 CG31362 .
VDRC has 4 RNAi stocks for FBgn0037213 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 0	4 of 4	0.10	Down
Head	222 ± 11	4 of 4	2.20	Up
Eye	169 ± 8	4 of 4	1.68	Up
Thoracicoabdominal ganglion	9 ± 2	2 of 4	0.10	Down
Salivary gland	135 ± 4	4 of 4	1.34	Up
Crop	900 ± 17	4 of 4	8.90	Up
Midgut	17 ± 2	0 of 4	0.20	Down
Tubule	22 ± 1	3 of 4	0.20	Down
Hindgut	417 ± 3	4 of 4	4.10	Up
Heart	28 ± 1	4 of 4	0.28	Down
Fat body	49 ± 5	4 of 4	0.49	Down
Ovary	37 ± 2	4 of 4	0.40	Down
Testis	8 ± 1	0 of 4	0.10	Down
Male accessory glands	420 ± 13	4 of 4	4.20	Up
Virgin spermatheca	189 ± 7	4 of 4	1.88	Up
Mated spermatheca	218 ± 23	4 of 4	2.17	Up
Adult carcass	260 ± 9	4 of 4	2.60	Up
Larval CNS	81 ± 6	4 of 4	0.81	Down
Larval Salivary gland	81 ± 7	4 of 4	0.81	None
Larval midgut	29 ± 3	4 of 4	0.29	Down
Larval tubule	50 ± 6	4 of 4	0.50	Down
Larval hindgut	316 ± 7	4 of 4	3.14	Up
Larval fat body	169 ± 12	4 of 4	1.70	Up
Larval trachea	522 ± 31	4 of 4	5.18	Up
Larval carcass	227 ± 6	4 of 4	2.25	Up
S2 cells (growing)	3 ± 0	0 of 4	0.03	Down
Whole fly	100 ± 3	4 of 4

Looking for FBgn0037213. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720