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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037215 through 18771 annotations produced 1 hits



(CG12582):

Annotation Number : CG12582
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037215
Gbrowse : chr3R:23028-30295 (+) // 100.0 //
Probeset : 1624198_at
Accessions : protein= NP_649436; /// NP_730783;, nucleotide= NM_141179; /// NM_164315;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0037215.
BDGP gene expression has embryonic in situ data for CG12582: 17 pix of staining in 6 body parts.
Homophila reports that CG12582 is a close match (4e-124) to human gene MANB1;MANBA (NP_005899), a gene associated with Mannosidosis, beta, 248510 (3).
BioGrid reports that CG12582 interacts with CG7347 .
VDRC has 2 RNAi stocks for FBgn0037215 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain109 ± 54 of 4 0.60Down
Head231 ± 64 of 4 1.20None
Eye227 ± 184 of 4 1.21None
Thoracicoabdominal ganglion122 ± 14 of 4 0.70Down
Salivary gland570 ± 144 of 4 3.04Up
Crop124 ± 44 of 4 0.70Down
Midgut771 ± 394 of 4 4.10Up
Tubule537 ± 554 of 4 2.90Up
Hindgut214 ± 94 of 4 1.10None
Heart251 ± 154 of 4 1.34Up
Fat body268 ± 104 of 4 1.43Up
Ovary136 ± 34 of 4 0.70Down
Testis30 ± 14 of 4 0.20Down
Male accessory glands243 ± 94 of 4 1.30Up
Virgin spermatheca419 ± 294 of 4 2.24Up
Mated spermatheca356 ± 124 of 4 1.90Up
Adult carcass219 ± 74 of 4 1.20None
Larval CNS109 ± 74 of 4 0.58Down
Larval Salivary gland128 ± 84 of 4 0.68Down
Larval midgut412 ± 94 of 4 2.20Up
Larval tubule440 ± 154 of 4 2.30Up
Larval hindgut166 ± 44 of 4 0.89None
Larval fat body267 ± 234 of 4 1.40Up
Larval trachea196 ± 174 of 4 1.05None
Larval carcass132 ± 24 of 4 0.71Down
S2 cells (growing)576 ± 94 of 4 3.07Up
Whole fly187 ± 154 of 4

Looking for FBgn0037215. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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