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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037218 through 18771 annotations produced 1 hits



auxilin (aux):

Annotation Number : CG1107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037218
Gbrowse : chr3R:37504-53244 (+) // 100.0 //
Probeset : 1630721_s_at
Accessions : protein= NP_649438; /// NP_730785;, nucleotide= NM_141181; /// NM_164317;
Interpro : 0004672 // protein kinase activity // non-traceable author statement /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0037218.
BDGP gene expression has embryonic in situ data for auxillin: 13 pix of staining in 8 body parts.
Homophila reports that CG1107 is a close match (1e-11) to human gene ACVRLK3;ALK3;BMPR1A (NP_004320), a gene associated with Juvenile polyposis syndrome, infantile form, 174900 (3);Polyposis syndrome, hereditary mixed, 2, 610069 (3);Polyposis, juvenile intestinal, 174900 (3).
BioGrid reports that CG1107 interacts with CG15436 CG8942 .
TRiP has 3 RNAi stocks for FBgn0037218 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037218 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain464 ± 44 of 4 1.70Up
Head266 ± 124 of 4 1.00None
Eye453 ± 124 of 4 1.62Up
Thoracicoabdominal ganglion522 ± 184 of 4 1.90Up
Salivary gland580 ± 144 of 4 2.08Up
Crop291 ± 84 of 4 1.00None
Midgut445 ± 144 of 4 1.60Up
Tubule559 ± 64 of 4 2.00Up
Hindgut349 ± 74 of 4 1.30None
Heart1121 ± 384 of 4 4.02Up
Fat body332 ± 194 of 4 1.19None
Ovary546 ± 94 of 4 2.00Up
Testis137 ± 24 of 4 0.50Down
Male accessory glands348 ± 54 of 4 1.20None
Virgin spermatheca529 ± 214 of 4 1.90Up
Mated spermatheca593 ± 184 of 4 2.12Up
Adult carcass231 ± 134 of 4 0.80None
Larval CNS382 ± 164 of 4 1.37Up
Larval Salivary gland588 ± 164 of 4 2.11Up
Larval midgut406 ± 214 of 4 1.46Up
Larval tubule599 ± 144 of 4 2.10Up
Larval hindgut466 ± 84 of 4 1.67Up
Larval fat body287 ± 104 of 4 1.00None
Larval trachea531 ± 184 of 4 1.90Up
Larval carcass415 ± 104 of 4 1.49Up
S2 cells (growing)438 ± 144 of 4 1.57Up
Whole fly279 ± 244 of 4

Looking for FBgn0037218. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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