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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037220 through 18771 annotations produced 1 hits


Annotation Number : CG14641
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037220
Gbrowse : chr3R:56474-58077 (-) // 100.0 //
Probeset : 1638840_at
Accessions : protein= NP_649440;, nucleotide= NM_141183;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator"
FlyMine data for FBgn0037220.
BDGP gene expression has embryonic in situ data for CG14641: 19 pix of staining in 12 body parts.
BioGrid reports that CG14641 interacts with CG2701 CG5869 CG9911 CG14708 CG14977 CG15631 CG18584 CG30497 CG31973 CG3510 CG4407 CG4550 CG6459 CG7109 CG7954 CG8374 CG8426 CG9446 CG33057 CG7163 CG33546 .
VDRC has 2 RNAi stocks for FBgn0037220 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain302 84 of 4 1.00None
Head237 84 of 4 0.80Down
Eye236 34 of 4 0.75Down
Thoracicoabdominal ganglion269 64 of 4 0.90Down
Salivary gland381 94 of 4 1.21Up
Crop355 124 of 4 1.10Up
Midgut262 94 of 4 0.80Down
Tubule160 24 of 4 0.50Down
Hindgut270 74 of 4 0.90Down
Heart232 74 of 4 0.74Down
Fat body245 164 of 4 0.78Down
Ovary475 64 of 4 1.50Up
Testis309 94 of 4 1.00None
Male accessory glands313 84 of 4 1.00None
Virgin spermatheca367 74 of 4 1.16Up
Mated spermatheca366 144 of 4 1.16Up
Adult carcass216 44 of 4 0.70Down
Larval CNS567 104 of 4 1.80Up
Larval Salivary gland532 444 of 4 1.69Up
Larval midgut272 74 of 4 0.86Down
Larval tubule312 64 of 4 1.00None
Larval hindgut333 64 of 4 1.06None
Larval fat body364 174 of 4 1.20None
Larval trachea407 334 of 4 1.29Up
Larval carcass333 64 of 4 1.06None
S2 cells (growing)399 34 of 4 1.26Up
Whole fly316 64 of 4

Looking for FBgn0037220. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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