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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037222 through 18771 annotations produced 4 hits



(CG14642):

Annotation Number : CG14642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037222
Gbrowse : chr3R:66766-68508 (-) // 100.0 //
Probeset : 1623689_a_at
Accessions : protein= NP_649441; /// NP_730791;, nucleotide= NM_141184; /// NM_164322;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0037222.
BDGP gene expression has embryonic in situ data for CG14642: 4 pix of staining in 1 body parts.
Homophila reports that CG14642 is a close match (1e-12) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
BioGrid reports that CG14642 interacts with CG17107 .
VDRC has 2 RNAi stocks for FBgn0037222 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head25 24 of 4 1.00None
Eye9 10 of 4 0.35Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland4 00 of 4 0.16Down
Crop8 30 of 4 0.30Down
Midgut18 12 of 4 0.70None
Tubule94 154 of 4 3.60Up
Hindgut7 10 of 4 0.30Down
Heart23 53 of 4 0.92None
Fat body17 81 of 4 0.66None
Ovary1 10 of 4 0.10Down
Testis264 144 of 410.20Up
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca907 854 of 434.84Up
Mated spermatheca843 1064 of 432.37Up
Adult carcass25 42 of 4 1.00None
Larval CNS8 00 of 4 0.33Down
Larval Salivary gland1 00 of 4 0.06Down
Larval midgut9 41 of 4 0.38Down
Larval tubule748 124 of 428.70Up
Larval hindgut14 23 of 4 0.54Down
Larval fat body135 144 of 4 5.20Up
Larval trachea16 34 of 4 0.65None
Larval carcass157 154 of 4 6.06Up
S2 cells (growing)179 94 of 4 6.87Up
Whole fly26 34 of 4



"ATPase synthase ( subunit d /// "):

Annotation Number : CG6030
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr3R:14920719-14921792 (+) // 100.0 //
Probeset : 1627256_s_at
Accessions : protein= , nucleotide= NP_524402; /// NP_732400;
Pathway : 0006508 // proteolysis // inferred from electronic annotation /// 0006508 // proteolysis // non-traceable author stateme
Interpro : "0000276 // mitochondrial proton-transporting ATP synthase complex
FlyMine data for full length.
BioGrid reports that CG6030 interacts with CG6486 CG6688 CG8933 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1729 484 of 4 1.10None
Head1862 884 of 4 1.10None
Eye2577 504 of 4 1.59Up
Thoracicoabdominal ganglion2181 654 of 4 1.30Up
Salivary gland2482 794 of 4 1.53Up
Crop1665 654 of 4 1.00None
Midgut1667 444 of 4 1.00None
Tubule1406 484 of 4 0.90Down
Hindgut2934 544 of 4 1.80Up
Heart2637 884 of 4 1.63Up
Fat body2317 2844 of 4 1.43Up
Ovary933 114 of 4 0.60Down
Testis387 94 of 4 0.20Down
Male accessory glands852 104 of 4 0.50Down
Virgin spermatheca1345 924 of 4 0.83None
Mated spermatheca1288 234 of 4 0.79Down
Adult carcass3705 1524 of 4 2.30Up
Larval CNS1261 1324 of 4 0.78Down
Larval Salivary gland1737 1294 of 4 1.07None
Larval midgut1366 584 of 4 0.84Down
Larval tubule1607 2154 of 4 1.00None
Larval hindgut2386 574 of 4 1.47Up
Larval fat body684 484 of 4 0.40Down
Larval trachea1669 904 of 4 1.03None
Larval carcass2373 1954 of 4 1.46Up
S2 cells (growing)1176 444 of 4 0.73Down
Whole fly1622 344 of 4



(CG14642):

Annotation Number : CG14642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037222
Gbrowse : chr3R:66854-68508 (-) // 100.0 //
Probeset : 1624540_at
Accessions : protein= NP_649441; /// NP_730791;, nucleotide= NM_141184; /// NM_164322;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0037222.
BDGP gene expression has embryonic in situ data for CG14642: 4 pix of staining in 1 body parts.
Homophila reports that CG14642 is a close match (1e-12) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
BioGrid reports that CG14642 interacts with CG17107 .
VDRC has 2 RNAi stocks for FBgn0037222 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 23 of 4 1.30None
Head24 84 of 4 3.40None
Eye31 34 of 4 4.30Up
Thoracicoabdominal ganglion10 13 of 4 1.40None
Salivary gland3 10 of 4 0.49None
Crop16 14 of 4 2.20Up
Midgut6 21 of 4 0.80None
Tubule16 13 of 4 2.20Up
Hindgut8 03 of 4 1.10None
Heart42 34 of 4 5.74Up
Fat body68 194 of 4 9.34Up
Ovary2 00 of 4 0.30None
Testis5 04 of 4 0.80None
Male accessory glands5 10 of 4 0.70None
Virgin spermatheca156 24 of 421.22Up
Mated spermatheca145 84 of 419.76Up
Adult carcass11 22 of 4 1.60None
Larval CNS4 13 of 4 0.62None
Larval Salivary gland3 01 of 4 0.52None
Larval midgut3 00 of 4 0.49None
Larval tubule149 104 of 420.30Up
Larval hindgut7 04 of 4 1.04None
Larval fat body209 344 of 428.50Up
Larval trachea11 34 of 4 1.50None
Larval carcass58 34 of 4 7.88Up
S2 cells (growing)27 34 of 4 3.74Up
Whole fly7 23 of 4



(CG14642):

Annotation Number : CG14642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037222
Gbrowse : chr3R:66766-68508 (-) // 100.0 //
Probeset : 1634805_at
Accessions : protein= NP_649441; /// NP_730791;, nucleotide= NM_141184; /// NM_164322;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0037222.
BDGP gene expression has embryonic in situ data for CG14642: 4 pix of staining in 1 body parts.
Homophila reports that CG14642 is a close match (1e-12) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
BioGrid reports that CG14642 interacts with CG17107 .
VDRC has 2 RNAi stocks for FBgn0037222 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 03 of 4 0.30Down
Head15 34 of 4 0.80None
Eye7 11 of 4 0.37Down
Thoracicoabdominal ganglion8 13 of 4 0.40Down
Salivary gland14 21 of 4 0.76None
Crop8 12 of 4 0.40Down
Midgut13 04 of 4 0.70None
Tubule44 44 of 4 2.30Up
Hindgut9 14 of 4 0.50Down
Heart17 14 of 4 0.90None
Fat body27 24 of 4 1.40Up
Ovary2 11 of 4 0.10Down
Testis116 154 of 4 6.10Up
Male accessory glands6 11 of 4 0.30Down
Virgin spermatheca159 54 of 4 8.29Up
Mated spermatheca155 144 of 4 8.10Up
Adult carcass14 22 of 4 0.70None
Larval CNS7 34 of 4 0.40Down
Larval Salivary gland5 10 of 4 0.26Down
Larval midgut8 11 of 4 0.43Down
Larval tubule287 154 of 415.00Up
Larval hindgut15 14 of 4 0.82None
Larval fat body104 84 of 4 5.40Up
Larval trachea13 24 of 4 0.71None
Larval carcass165 104 of 4 8.60Up
S2 cells (growing)119 74 of 4 6.20Up
Whole fly19 24 of 4

Looking for FBgn0037222. 4 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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