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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037223 through 18771 annotations produced 1 hits



():

Annotation Number : CG14638
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037223
Gbrowse : chr3R:70292-70780 (+) // 100.0 //
Probeset : 1638437_at
Accessions : protein= , nucleotide=
FlyMine data for FBgn0037223.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.80None
Head0 ± 00 of 4 0.70None
Eye0 ± 00 of 4 0.55None
Thoracicoabdominal ganglion3 ± 10 of 4 3.30None
Salivary gland3 ± 10 of 4 2.55None
Crop1 ± 00 of 4 1.40None
Midgut1 ± 00 of 4 1.10None
Tubule0 ± 00 of 4 0.80None
Hindgut3 ± 10 of 4 2.60None
Heart0 ± 00 of 4 0.36None
Fat body1 ± 00 of 4 1.62None
Ovary0 ± 00 of 4 0.40None
Testis1 ± 00 of 4 1.40None
Male accessory glands2 ± 10 of 4 1.80None
Virgin spermatheca38 ± 14 of 432.64Up
Mated spermatheca33 ± 64 of 428.19Up
Adult carcass1 ± 00 of 4 1.40None
Larval CNS0 ± 00 of 4 0.64None
Larval Salivary gland3 ± 20 of 4 3.30None
Larval midgut1 ± 00 of 4 1.34None
Larval tubule5 ± 20 of 4 4.80None
Larval hindgut1 ± 10 of 4 1.49None
Larval fat body3 ± 20 of 4 3.00None
Larval trachea5 ± 20 of 4 4.34None
Larval carcass14 ± 33 of 412.45Up
S2 cells (growing)2 ± 00 of 4 2.11None
Whole fly1 ± 00 of 4

Looking for FBgn0037223. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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