FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037224 through 18771 annotations produced 1 hits

CG14639 (TwdlF):

Annotation Number : CG14639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037224
Gbrowse : chr3R:72743-74036 (+) // 100.0 //
Probeset : 1634284_at
Accessions : protein= NP_649443;, nucleotide= NM_141186;
FlyMine data for FBgn0037224.
BDGP gene expression has embryonic in situ data for CG14639: 11 pix of staining in 4 body parts.
BioGrid reports that CG14639 interacts with CG15753 CG3114 CG5888 CG8219 CG8981 .
VDRC has 2 RNAi stocks for FBgn0037224 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.10	None
Head	2 ± 0	0 of 4	0.30	None
Eye	0 ± 0	0 of 4	0.06	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.10	None
Salivary gland	1 ± 0	0 of 4	0.23	None
Crop	3 ± 1	0 of 4	0.40	None
Midgut	0 ± 0	0 of 4	0.10	None
Tubule	2 ± 0	0 of 4	0.20	Down
Hindgut	1 ± 0	0 of 4	0.20	None
Heart	1 ± 0	0 of 4	0.19	None
Fat body	1 ± 0	0 of 4	0.11	None
Ovary	0 ± 0	0 of 4	0.00	None
Testis	0 ± 0	0 of 4	0.10	None
Male accessory glands	2 ± 0	0 of 4	0.20	None
Virgin spermatheca	7 ± 1	0 of 4	0.88	None
Mated spermatheca	6 ± 2	1 of 4	0.79	None
Adult carcass	4 ± 2	0 of 4	0.50	None
Larval CNS	1 ± 1	0 of 4	0.14	None
Larval Salivary gland	2 ± 1	0 of 4	0.26	None
Larval midgut	0 ± 0	0 of 4	0.08	None
Larval tubule	0 ± 0	0 of 4	0.10	None
Larval hindgut	1 ± 0	0 of 4	0.14	None
Larval fat body	0 ± 0	0 of 4	0.10	None
Larval trachea	2 ± 2	0 of 4	0.26	None
Larval carcass	9 ± 2	0 of 4	1.09	None
S2 cells (growing)	0 ± 0	0 of 4	0.07	None
Whole fly	8 ± 6	1 of 4

Looking for FBgn0037224. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720