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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037229 through 18771 annotations produced 2 hits



chr2RHet:30696-37111 (+) // 99.73 // /// chr3LHet:742023-748179 (+) // 90.11 // /// chr2R:5038861-5045274 (+) // 99.78 // /// chr2R:3703231-3709643 (+) // 99.72 // /// chr3R:16092292-16098706 (+) // 99.75 // /// chr3R:1271737-1278140 (+) // 99.56 // /// chr2L:21691881-21698294 (-) // 99.72 // /// chr3RHet:1175743-1182074 (-) // 98.46 // /// chrX:11429128-11435541 (-) // 99.75 // /// chr3R:96511-102924 (-) // 99.77 // ( /// /// ):

Annotation Number : U89994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633959_s_at
Accessions : protein= , nucleotide= NP_001097672; /// NP_649448; /// NP_730799;
Pathway : 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from elec
Interpro : 0016020 // membrane // inferred from electronic annotation
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 34 of 4 0.60Down
Head790 1414 of 4 4.40Up
Eye488 1034 of 4 2.73None
Thoracicoabdominal ganglion45 34 of 4 0.30Down
Salivary gland78 54 of 4 0.44Down
Crop25 14 of 4 0.10Down
Midgut295 194 of 4 1.60Up
Tubule172 114 of 4 1.00None
Hindgut184 74 of 4 1.00None
Heart416 44 of 4 2.32Up
Fat body1392 1074 of 4 7.77Up
Ovary7 04 of 4 0.00Down
Testis18 04 of 4 0.10Down
Male accessory glands112 54 of 4 0.60Down
Virgin spermatheca862 154 of 4 4.81Up
Mated spermatheca860 914 of 4 4.80Up
Adult carcass409 354 of 4 2.30Up
Larval CNS31 44 of 4 0.17Down
Larval Salivary gland51 54 of 4 0.29Down
Larval midgut45 94 of 4 0.25Down
Larval tubule33 44 of 4 0.20Down
Larval hindgut224 394 of 4 1.25None
Larval fat body938 714 of 4 5.20Up
Larval trachea23 104 of 4 0.13Down
Larval carcass46 64 of 4 0.26Down
S2 cells (growing)627 64 of 4 3.50Up
Whole fly179 94 of 4



/// (CG9766 /// DsimCG9766):

Annotation Number : CG9766
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037229
Gbrowse : chr3R:94942-103435 (-) // 100.0 //
Probeset : 1631666_s_at
Accessions : protein= NP_001097672; /// NP_649448; /// NP_730799;, nucleotide= NM_001104202; /// NM_141191; /// NM_164326;
FlyMine data for FBgn0037229.
BDGP gene expression has embryonic in situ data for CG9766: 4 pix of staining in 1 body parts.
Homophila reports that CG9766 is a close match (3e-11) to human gene ANK1;SPH2 (NP_065209), a gene associated with Spherocytosis-2 (3).
VDRC has 3 RNAi stocks for FBgn0037229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 14 of 4 1.70None
Head75 84 of 4 3.20Up
Eye47 94 of 4 1.99None
Thoracicoabdominal ganglion21 24 of 4 0.90None
Salivary gland4 30 of 4 0.19Down
Crop2 00 of 4 0.10Down
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.10Down
Hindgut3 10 of 4 0.20Down
Heart66 34 of 4 2.80Up
Fat body202 184 of 4 8.55Up
Ovary1 00 of 4 0.10Down
Testis85 64 of 4 3.60Up
Male accessory glands4 20 of 4 0.20Down
Virgin spermatheca157 94 of 4 6.66Up
Mated spermatheca182 244 of 4 7.70Up
Adult carcass31 14 of 4 1.30Up
Larval CNS2 20 of 4 0.09Down
Larval Salivary gland1 00 of 4 0.05Down
Larval midgut1 00 of 4 0.08Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut4 10 of 4 0.19Down
Larval fat body61 74 of 4 2.60Up
Larval trachea4 20 of 4 0.18Down
Larval carcass1 00 of 4 0.07Down
S2 cells (growing)7 02 of 4 0.31Down
Whole fly23 14 of 4

Looking for FBgn0037229. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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