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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037231 through 18771 annotations produced 1 hits



Charged multivesicular body protein 3 (vps24):

Annotation Number : CG9779
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037231
Gbrowse : chr3R:135363-136667 (-) // 100.0 //
Probeset : 1625824_at
Accessions : protein= NP_649451;, nucleotide= NM_141194;
Pathway : engulfment // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation"
FlyMine data for FBgn0037231.
BDGP gene expression has embryonic in situ data for CG9779: 9 pix of staining in 6 body parts.
TRiP has 1 RNAi stocks for FBgn0037231 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037231 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain743 ± 194 of 4 1.80Up
Head610 ± 304 of 4 1.50Up
Eye944 ± 454 of 4 2.29Up
Thoracicoabdominal ganglion864 ± 284 of 4 2.10Up
Salivary gland636 ± 154 of 4 1.54Up
Crop1023 ± 134 of 4 2.50Up
Midgut374 ± 54 of 4 0.90None
Tubule943 ± 644 of 4 2.30Up
Hindgut889 ± 134 of 4 2.20Up
Heart471 ± 194 of 4 1.14None
Fat body344 ± 484 of 4 0.84None
Ovary533 ± 124 of 4 1.30Up
Testis425 ± 104 of 4 1.00None
Male accessory glands450 ± 124 of 4 1.10None
Virgin spermatheca363 ± 134 of 4 0.88Down
Mated spermatheca442 ± 294 of 4 1.07None
Adult carcass523 ± 94 of 4 1.30Up
Larval CNS664 ± 794 of 4 1.61Up
Larval Salivary gland482 ± 384 of 4 1.17None
Larval midgut348 ± 124 of 4 0.84Down
Larval tubule1182 ± 354 of 4 2.90Up
Larval hindgut743 ± 74 of 4 1.80Up
Larval fat body561 ± 424 of 4 1.40Up
Larval trachea547 ± 194 of 4 1.33Up
Larval carcass747 ± 414 of 4 1.81Up
S2 cells (growing)610 ± 84 of 4 1.48Up
Whole fly412 ± 144 of 4

Looking for FBgn0037231. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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