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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037232 through 18771 annotations produced 1 hits



(CG9791):

Annotation Number : CG9791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037232
Gbrowse : chr3R:137257-140096 (+) // 100.0 //
Probeset : 1637793_at
Accessions : protein= NP_649452;, nucleotide= NM_141195;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annot
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0037232.
VDRC has 1 RNAi stocks for FBgn0037232 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 14 of 4 0.80Down
Head24 14 of 4 0.50Down
Eye15 04 of 4 0.34Down
Thoracicoabdominal ganglion38 24 of 4 0.80None
Salivary gland65 64 of 4 1.43Up
Crop28 34 of 4 0.60Down
Midgut42 34 of 4 0.90None
Tubule56 34 of 4 1.20Up
Hindgut32 34 of 4 0.70Down
Heart26 44 of 4 0.58Down
Fat body35 74 of 4 0.78None
Ovary68 04 of 4 1.50Up
Testis25 24 of 4 0.60Down
Male accessory glands23 23 of 4 0.50Down
Virgin spermatheca23 23 of 4 0.51Down
Mated spermatheca33 24 of 4 0.73Down
Adult carcass34 24 of 4 0.80Down
Larval CNS35 64 of 4 0.79None
Larval Salivary gland46 34 of 4 1.01None
Larval midgut39 14 of 4 0.85None
Larval tubule28 24 of 4 0.60Down
Larval hindgut44 54 of 4 0.97None
Larval fat body21 32 of 4 0.50Down
Larval trachea25 44 of 4 0.55Down
Larval carcass24 44 of 4 0.53Down
S2 cells (growing)33 24 of 4 0.74Down
Whole fly45 24 of 4

Looking for FBgn0037232. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime