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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037234 through 18771 annotations produced 1 hits



(CG9795):

Annotation Number : CG9795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037234
Gbrowse : chr3R:145411-151817 (+) // 100.0 //
Probeset : 1631090_a_at
Accessions : protein= NP_001014604; /// NP_649454; /// NP_730812; /// NP_788573;, nucleotide= NM_001014604; /// NM_141197; /// NM_164338; /// NM_176396;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037234.
BDGP gene expression has embryonic in situ data for CG9795: 16 pix of staining in 8 body parts.
VDRC has 1 RNAi stocks for FBgn0037234 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain215 104 of 4 1.80Up
Head99 94 of 4 0.80None
Eye87 44 of 4 0.72Down
Thoracicoabdominal ganglion141 44 of 4 1.20None
Salivary gland115 144 of 4 0.95None
Crop110 54 of 4 0.90None
Midgut96 84 of 4 0.80None
Tubule56 14 of 4 0.50Down
Hindgut69 44 of 4 0.60Down
Heart56 74 of 4 0.47Down
Fat body70 154 of 4 0.58Down
Ovary226 124 of 4 1.90Up
Testis77 54 of 4 0.60Down
Male accessory glands137 124 of 4 1.10None
Virgin spermatheca105 174 of 4 0.87None
Mated spermatheca149 194 of 4 1.23None
Adult carcass98 184 of 4 0.80None
Larval CNS121 194 of 4 1.00None
Larval Salivary gland64 54 of 4 0.53Down
Larval midgut66 14 of 4 0.55Down
Larval tubule63 44 of 4 0.50Down
Larval hindgut84 34 of 4 0.70Down
Larval fat body57 34 of 4 0.50Down
Larval trachea92 74 of 4 0.76Down
Larval carcass88 74 of 4 0.73Down
S2 cells (growing)150 24 of 4 1.24Up
Whole fly121 74 of 4

Looking for FBgn0037234. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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