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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037235 through 18771 annotations produced 1 hits



(CG1103):

Annotation Number : CG1103
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037235
Gbrowse : chr3R:163481-165636 (+) // 99.7 //
Probeset : 1640526_at
Accessions : protein= NP_001036660; /// NP_649456;, nucleotide= NM_001043195; /// NM_141199;
FlyMine data for FBgn0037235.
BDGP gene expression has embryonic in situ data for CG1103: 16 pix of staining in 16 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain80 ± 44 of 4 0.30Down
Head63 ± 14 of 4 0.30Down
Eye125 ± 34 of 4 0.49Down
Thoracicoabdominal ganglion70 ± 24 of 4 0.30Down
Salivary gland150 ± 174 of 4 0.59Down
Crop119 ± 24 of 4 0.50Down
Midgut69 ± 44 of 4 0.30Down
Tubule121 ± 34 of 4 0.50Down
Hindgut104 ± 64 of 4 0.40Down
Heart128 ± 54 of 4 0.51Down
Fat body80 ± 144 of 4 0.32Down
Ovary488 ± 24 of 4 1.90Up
Testis261 ± 64 of 4 1.00None
Male accessory glands117 ± 24 of 4 0.50Down
Virgin spermatheca107 ± 24 of 4 0.42Down
Mated spermatheca104 ± 64 of 4 0.41Down
Adult carcass68 ± 34 of 4 0.30Down
Larval CNS280 ± 254 of 4 1.11None
Larval Salivary gland383 ± 34 of 4 1.51Up
Larval midgut133 ± 354 of 4 0.53Down
Larval tubule1008 ± 554 of 4 4.00Up
Larval hindgut266 ± 254 of 4 1.05None
Larval fat body431 ± 304 of 4 1.70Up
Larval trachea274 ± 104 of 4 1.09None
Larval carcass643 ± 1054 of 4 2.54Up
S2 cells (growing)645 ± 44 of 4 2.55Up
Whole fly253 ± 94 of 4

Looking for FBgn0037235. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime