FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037238 through 18771 annotations produced 1 hits

chr3R:185509-192577 (+) // 100.0 // ():

Annotation Number : CG1090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638302_a_at
Accessions : protein= , nucleotide= NP_649459; /// NP_730819;
Pathway : 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic ann
Interpro : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
FlyMine data for full length.
Homophila reports that CG1090 is a close match (4e-45) to human gene NCKX5;SHEP4;SLC24A5 (NP_995322), a gene associated with [Skin/hair/eye pigmentation 4, fair/dark skin], 113750 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	309 ± 18	4 of 4	23.70	Up
Head	125 ± 13	4 of 4	9.60	Up
Eye	153 ± 23	4 of 4	11.76	Up
Thoracicoabdominal ganglion	182 ± 14	4 of 4	14.00	Up
Salivary gland	9 ± 2	1 of 4	0.69	None
Crop	3 ± 1	0 of 4	0.30	Down
Midgut	5 ± 1	3 of 4	0.40	Down
Tubule	5 ± 0	1 of 4	0.40	Down
Hindgut	5 ± 0	2 of 4	0.40	Down
Heart	5 ± 1	1 of 4	0.40	Down
Fat body	6 ± 1	3 of 4	0.50	Down
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	1 ± 0	0 of 4	0.10	Down
Male accessory glands	3 ± 1	1 of 4	0.30	Down
Virgin spermatheca	4 ± 1	1 of 4	0.37	Down
Mated spermatheca	3 ± 0	0 of 4	0.29	Down
Adult carcass	12 ± 2	2 of 4	1.00	None
Larval CNS	95 ± 12	4 of 4	7.33	Up
Larval Salivary gland	4 ± 2	1 of 4	0.32	Down
Larval midgut	3 ± 1	0 of 4	0.25	Down
Larval tubule	4 ± 1	1 of 4	0.40	Down
Larval hindgut	3 ± 1	1 of 4	0.23	Down
Larval fat body	6 ± 1	0 of 4	0.50	Down
Larval trachea	4 ± 3	1 of 4	0.31	Down
Larval carcass	6 ± 1	4 of 4	0.47	Down
S2 cells (growing)	7 ± 0	4 of 4	0.58	Down
Whole fly	13 ± 1	4 of 4

Looking for FBgn0037238. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720