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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037242 through 18771 annotations produced 1 hits



(CG9855):

Annotation Number : CG9855
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037242
Gbrowse : chr3R:221882-223609 (-) // 100.0 //
Probeset : 1623940_at
Accessions : protein= NP_649463;, nucleotide= NM_141206;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0037242.
VDRC has 3 RNAi stocks for FBgn0037242 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain282 ± 94 of 4 0.90None
Head200 ± 124 of 4 0.60Down
Eye157 ± 54 of 4 0.51Down
Thoracicoabdominal ganglion234 ± 54 of 4 0.80Down
Salivary gland228 ± 34 of 4 0.74Down
Crop296 ± 104 of 4 1.00None
Midgut224 ± 64 of 4 0.70Down
Tubule276 ± 94 of 4 0.90Down
Hindgut223 ± 54 of 4 0.70Down
Heart157 ± 44 of 4 0.51Down
Fat body213 ± 144 of 4 0.69Down
Ovary470 ± 94 of 4 1.50Up
Testis1270 ± 194 of 4 4.10Up
Male accessory glands596 ± 174 of 4 1.90Up
Virgin spermatheca177 ± 74 of 4 0.57Down
Mated spermatheca197 ± 64 of 4 0.63Down
Adult carcass171 ± 44 of 4 0.60Down
Larval CNS260 ± 84 of 4 0.84Down
Larval Salivary gland220 ± 84 of 4 0.71Down
Larval midgut157 ± 104 of 4 0.51Down
Larval tubule246 ± 64 of 4 0.80Down
Larval hindgut170 ± 54 of 4 0.55Down
Larval fat body289 ± 674 of 4 0.90None
Larval trachea189 ± 94 of 4 0.61Down
Larval carcass202 ± 14 of 4 0.65Down
S2 cells (growing)413 ± 134 of 4 1.33Up
Whole fly311 ± 34 of 4

Looking for FBgn0037242. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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