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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037244 through 18771 annotations produced 1 hits



(CG14647):

Annotation Number : CG14647
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037244
Gbrowse : chr3R:226211-227739 (+) // 100.0 //
Probeset : 1629949_at
Accessions : protein= NP_649465;, nucleotide= NM_141208;
Pathway : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inf
Interpro : 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein bindin
FlyMine data for FBgn0037244.
BDGP gene expression has embryonic in situ data for CG14647: 4 pix of staining in 1 body parts.
BioGrid reports that CG14647 interacts with CG14647 CG18780 CG30417 CG31534 .
TRiP has 1 RNAi stocks for FBgn0037244 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037244 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain325 94 of 4 1.20Up
Head225 74 of 4 0.80Down
Eye444 74 of 4 1.61Up
Thoracicoabdominal ganglion304 184 of 4 1.10None
Salivary gland271 74 of 4 0.99None
Crop194 114 of 4 0.70Down
Midgut247 24 of 4 0.90Down
Tubule421 94 of 4 1.50Up
Hindgut203 54 of 4 0.70Down
Heart259 114 of 4 0.94None
Fat body152 174 of 4 0.55Down
Ovary537 94 of 4 2.00Up
Testis93 54 of 4 0.30Down
Male accessory glands160 64 of 4 0.60Down
Virgin spermatheca339 164 of 4 1.23Up
Mated spermatheca317 224 of 4 1.15None
Adult carcass152 74 of 4 0.60Down
Larval CNS222 154 of 4 0.81Down
Larval Salivary gland226 204 of 4 0.82None
Larval midgut245 44 of 4 0.89Down
Larval tubule359 104 of 4 1.30Up
Larval hindgut239 74 of 4 0.87Down
Larval fat body298 234 of 4 1.10None
Larval trachea323 194 of 4 1.17Up
Larval carcass207 64 of 4 0.75Down
S2 cells (growing)201 44 of 4 0.73Down
Whole fly275 84 of 4

Looking for FBgn0037244. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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