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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037251 through 18771 annotations produced 1 hits



(CG9804):

Annotation Number : CG9804
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037251
Gbrowse : chr3R:261943-263051 (-) // 100.0 //
Probeset : 1635849_at
Accessions : protein= NP_649472;, nucleotide= NM_141215;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic ann
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred
FlyMine data for FBgn0037251.
VDRC has 3 RNAi stocks for FBgn0037251 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain168 ± 54 of 4 1.50Up
Head112 ± 44 of 4 1.00None
Eye94 ± 34 of 4 0.86Down
Thoracicoabdominal ganglion186 ± 44 of 4 1.70Up
Salivary gland220 ± 24 of 4 2.00Up
Crop154 ± 64 of 4 1.40Up
Midgut93 ± 44 of 4 0.80Down
Tubule161 ± 44 of 4 1.50Up
Hindgut146 ± 24 of 4 1.30Up
Heart87 ± 44 of 4 0.79Down
Fat body75 ± 83 of 4 0.69Down
Ovary167 ± 24 of 4 1.50Up
Testis61 ± 24 of 4 0.60Down
Male accessory glands164 ± 84 of 4 1.50Up
Virgin spermatheca107 ± 14 of 4 0.98None
Mated spermatheca126 ± 74 of 4 1.15None
Adult carcass90 ± 03 of 4 0.80Down
Larval CNS165 ± 124 of 4 1.50Up
Larval Salivary gland356 ± 174 of 4 3.23Up
Larval midgut67 ± 34 of 4 0.61Down
Larval tubule142 ± 64 of 4 1.30Up
Larval hindgut169 ± 64 of 4 1.54Up
Larval fat body116 ± 104 of 4 1.10None
Larval trachea184 ± 134 of 4 1.68Up
Larval carcass198 ± 174 of 4 1.80Up
S2 cells (growing)169 ± 64 of 4 1.53Up
Whole fly110 ± 24 of 4

Looking for FBgn0037251. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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