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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037255 through 18771 annotations produced 1 hits



CG1078 (Fip1):

Annotation Number : CG1078
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037255
Gbrowse : chr3R:310762-313185 (+) // 100.0 //
Probeset : 1630213_at
Accessions : protein= NP_649476;, nucleotide= NM_141219;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037255.
BioGrid reports that CG1078 interacts with CG3642 CG11266 CG13871 CG2174 CG32635 CG9975 .
VDRC has 2 RNAi stocks for FBgn0037255 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 24 of 4 1.20None
Head41 ± 14 of 4 0.60Down
Eye65 ± 44 of 4 0.88None
Thoracicoabdominal ganglion71 ± 24 of 4 1.00None
Salivary gland70 ± 43 of 4 0.94None
Crop65 ± 54 of 4 0.90None
Midgut43 ± 54 of 4 0.60Down
Tubule33 ± 23 of 4 0.40Down
Hindgut55 ± 24 of 4 0.70None
Heart83 ± 64 of 4 1.12None
Fat body39 ± 44 of 4 0.53Down
Ovary144 ± 44 of 4 1.90Up
Testis33 ± 14 of 4 0.40Down
Male accessory glands94 ± 44 of 4 1.30None
Virgin spermatheca63 ± 24 of 4 0.85None
Mated spermatheca69 ± 54 of 4 0.94None
Adult carcass41 ± 34 of 4 0.60Down
Larval CNS153 ± 134 of 4 2.06Up
Larval Salivary gland95 ± 74 of 4 1.28None
Larval midgut35 ± 14 of 4 0.48Down
Larval tubule48 ± 44 of 4 0.60Down
Larval hindgut60 ± 54 of 4 0.80None
Larval fat body28 ± 23 of 4 0.40Down
Larval trachea152 ± 214 of 4 2.04Up
Larval carcass41 ± 44 of 4 0.55Down
S2 cells (growing)147 ± 44 of 4 1.97Up
Whole fly74 ± 74 of 4

Looking for FBgn0037255. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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