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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037279 through 18771 annotations produced 1 hits



(CG1129):

Annotation Number : CG1129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037279
Gbrowse : chr3R:639057-641747 (+) // 99.78 //
Probeset : 1638295_s_at
Accessions : protein= NP_649498; /// NP_730877;, nucleotide= NM_141241; /// NM_169021;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004475 // mannose-1-phosphate guanylyltransfer
FlyMine data for FBgn0037279.
BDGP gene expression has embryonic in situ data for CG1129: 18 pix of staining in 12 body parts.
BioGrid reports that CG1129 interacts with CG31000 CG8207 .
TRiP has 1 RNAi stocks for FBgn0037279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain133 ± 44 of 4 0.90None
Head115 ± 24 of 4 0.70Down
Eye99 ± 44 of 4 0.65Down
Thoracicoabdominal ganglion139 ± 74 of 4 0.90None
Salivary gland1397 ± 454 of 4 9.08Up
Crop279 ± 164 of 4 1.80Up
Midgut600 ± 324 of 4 3.90Up
Tubule477 ± 274 of 4 3.10Up
Hindgut296 ± 144 of 4 1.90Up
Heart229 ± 74 of 4 1.49Up
Fat body191 ± 124 of 4 1.24Up
Ovary181 ± 54 of 4 1.20Up
Testis117 ± 64 of 4 0.80Down
Male accessory glands466 ± 84 of 4 3.00Up
Virgin spermatheca716 ± 154 of 4 4.65Up
Mated spermatheca799 ± 244 of 4 5.19Up
Adult carcass152 ± 94 of 4 1.00None
Larval CNS132 ± 174 of 4 0.86None
Larval Salivary gland849 ± 234 of 4 5.52Up
Larval midgut345 ± 114 of 4 2.25Up
Larval tubule499 ± 184 of 4 3.20Up
Larval hindgut318 ± 84 of 4 2.07Up
Larval fat body286 ± 194 of 4 1.90Up
Larval trachea225 ± 324 of 4 1.47Up
Larval carcass137 ± 104 of 4 0.90None
S2 cells (growing)562 ± 104 of 4 3.65Up
Whole fly153 ± 74 of 4

Looking for FBgn0037279. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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