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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037291 through 18771 annotations produced 1 hits



(CG14662):

Annotation Number : CG14662
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037291
Gbrowse : chr3R:807720-809954 (-) // 100.0 //
Probeset : 1629027_at
Accessions : protein= NP_649510;, nucleotide= NM_141253;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0037291.
BDGP gene expression has embryonic in situ data for CG14662: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0037291 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 13 of 4 0.40Down
Head19 ± 24 of 4 0.80None
Eye6 ± 01 of 4 0.27Down
Thoracicoabdominal ganglion6 ± 21 of 4 0.30Down
Salivary gland12 ± 30 of 4 0.55None
Crop12 ± 31 of 4 0.50Down
Midgut30 ± 24 of 4 1.30None
Tubule15 ± 33 of 4 0.70Down
Hindgut9 ± 21 of 4 0.40Down
Heart24 ± 14 of 4 1.05None
Fat body15 ± 63 of 4 0.68None
Ovary4 ± 00 of 4 0.20Down
Testis141 ± 44 of 4 6.10Up
Male accessory glands21 ± 33 of 4 0.90None
Virgin spermatheca8 ± 23 of 4 0.36Down
Mated spermatheca10 ± 12 of 4 0.43Down
Adult carcass28 ± 34 of 4 1.20None
Larval CNS12 ± 24 of 4 0.53Down
Larval Salivary gland18 ± 32 of 4 0.77None
Larval midgut27 ± 24 of 4 1.17None
Larval tubule8 ± 11 of 4 0.30Down
Larval hindgut14 ± 23 of 4 0.63Down
Larval fat body30 ± 103 of 4 1.30None
Larval trachea10 ± 14 of 4 0.45Down
Larval carcass11 ± 03 of 4 0.50Down
S2 cells (growing)12 ± 21 of 4 0.52Down
Whole fly23 ± 14 of 4

Looking for FBgn0037291. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime