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FlyAtlas: the Drosophila gene expression atlas

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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037293 through 18771 annotations produced 1 hits



(CG12007):

Annotation Number : CG12007
Flybase ID : FBgn0037293
Gbrowse : chr3R:953809-955661 (+) // 99.78 //
Probeset : 1638354_at
Accessions : protein= NP_649512;, nucleotide= NM_141255;
Pathway : 0005968 // Rab-protein geranylgeranyltransferase complex // inferred from sequence or structural similarity
Interpro : 0004663 // Rab geranylgeranyltransferase activity // inferred from sequence or structural similarity /// 0004663 // Rab
FlyMine data for FBgn0037293.
BDGP gene expression has embryonic in situ data for CG12007: 4 pix of staining in 1 body parts.
BioGrid reports that CG12007 interacts with CG18627 CG9986 .
VDRC has 6 RNAi stocks for FBgn0037293 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain131 44 of 4 1.10Up
Head134 54 of 4 1.20Up
Eye167 114 of 4 1.44Up
Thoracicoabdominal ganglion162 44 of 4 1.40Up
Salivary gland239 124 of 4 2.07Up
Crop232 94 of 4 2.00Up
Midgut352 114 of 4 3.00Up
Tubule237 64 of 4 2.00Up
Hindgut186 54 of 4 1.60Up
Heart200 44 of 4 1.73Up
Fat body162 164 of 4 1.40Up
Ovary167 34 of 4 1.40Up
Testis58 04 of 4 0.50Down
Male accessory glands104 44 of 4 0.90None
Virgin spermatheca155 44 of 4 1.34Up
Mated spermatheca166 54 of 4 1.44Up
Adult carcass132 44 of 4 1.10Up
Larval CNS133 114 of 4 1.15Up
Larval Salivary gland261 74 of 4 2.25Up
Larval midgut369 74 of 4 3.18Up
Larval tubule407 144 of 4 3.50Up
Larval hindgut191 54 of 4 1.65Up
Larval fat body202 94 of 4 1.70Up
Larval trachea201 64 of 4 1.73Up
Larval carcass126 134 of 4 1.09None
S2 cells (growing)277 74 of 4 2.39Up
Whole fly116 14 of 4

Looking for FBgn0037293. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime