FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037295 through 18771 annotations produced 2 hits

dpr16 (dpr16):

Annotation Number : S.C3R000114
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037295
Gbrowse : chr3R:974225-981324 (+) // 100.0 //
Probeset : 1630311_at
Accessions : protein= NP_001036677; /// NP_649514;, nucleotide= NM_001043212; /// NM_141257;
FlyMine data for FBgn0037295.
BDGP gene expression has embryonic in situ data for CG12591: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037295 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	1.20	None
Head	2 ± 0	0 of 4	1.00	None
Eye	1 ± 0	0 of 4	0.85	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	1.00	None
Salivary gland	6 ± 1	0 of 4	3.21	Up
Crop	3 ± 1	0 of 4	1.60	None
Midgut	3 ± 1	0 of 4	1.60	None
Tubule	2 ± 0	0 of 4	1.10	None
Hindgut	4 ± 0	1 of 4	2.00	None
Heart	1 ± 0	0 of 4	0.85	None
Fat body	5 ± 1	2 of 4	2.67	None
Ovary	1 ± 0	0 of 4	0.90	None
Testis	1 ± 0	0 of 4	0.80	None
Male accessory glands	2 ± 0	0 of 4	1.20	None
Virgin spermatheca	5 ± 1	0 of 4	2.58	None
Mated spermatheca	3 ± 1	1 of 4	1.61	None
Adult carcass	5 ± 1	0 of 4	2.60	None
Larval CNS	2 ± 1	2 of 4	1.19	None
Larval Salivary gland	4 ± 1	0 of 4	1.94	None
Larval midgut	3 ± 0	0 of 4	1.63	None
Larval tubule	1 ± 0	0 of 4	0.80	None
Larval hindgut	1 ± 0	0 of 4	0.76	None
Larval fat body	1 ± 0	0 of 4	0.50	None
Larval trachea	3 ± 1	0 of 4	1.58	None
Larval carcass	1 ± 1	0 of 4	0.92	None
S2 cells (growing)	1 ± 0	0 of 4	0.85	None
Whole fly	2 ± 1	1 of 4

dpr16 (dpr16):

Annotation Number : CG12591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037295
Gbrowse : chr3R:976629-995849 (+) // 100.0 //
Probeset : 1628496_at
Accessions : protein= NP_001036677; /// NP_649514;, nucleotide= NM_001043212; /// NM_141257;
FlyMine data for FBgn0037295.
BDGP gene expression has embryonic in situ data for CG12591: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037295 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	111 ± 2	4 of 4	15.20	Up
Head	22 ± 1	4 of 4	3.10	Up
Eye	4 ± 0	0 of 4	0.66	None
Thoracicoabdominal ganglion	88 ± 3	4 of 4	12.10	Up
Salivary gland	1 ± 0	0 of 4	0.14	Down
Crop	1 ± 0	0 of 4	0.30	Down
Midgut	1 ± 0	0 of 4	0.20	Down
Tubule	1 ± 0	0 of 4	0.20	Down
Hindgut	1 ± 0	0 of 4	0.20	Down
Heart	0 ± 0	0 of 4	0.12	Down
Fat body	2 ± 2	0 of 4	0.36	Down
Ovary	0 ± 0	0 of 4	0.10	Down
Testis	37 ± 2	4 of 4	5.10	Up
Male accessory glands	2 ± 1	0 of 4	0.30	Down
Virgin spermatheca	0 ± 0	0 of 4	0.12	Down
Mated spermatheca	4 ± 1	0 of 4	0.55	None
Adult carcass	2 ± 0	0 of 4	0.40	Down
Larval CNS	43 ± 6	4 of 4	5.96	Up
Larval Salivary gland	2 ± 0	0 of 4	0.32	Down
Larval midgut	1 ± 0	0 of 4	0.17	Down
Larval tubule	0 ± 0	0 of 4	0.10	Down
Larval hindgut	1 ± 0	0 of 4	0.14	Down
Larval fat body	13 ± 3	3 of 4	1.80	None
Larval trachea	1 ± 2	0 of 4	0.27	Down
Larval carcass	1 ± 0	0 of 4	0.26	Down
S2 cells (growing)	1 ± 0	0 of 4	0.18	Down
Whole fly	7 ± 1	3 of 4

Looking for FBgn0037295. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720