FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037297 through 18771 annotations produced 1 hits

(CG1116):

Annotation Number : CG1116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037297
Gbrowse : chr3R:1045389-1047275 (+) // 100.0 //
Probeset : 1641420_s_at
Accessions : protein= NP_649516; /// NP_730895;, nucleotide= NM_141259; /// NM_169028;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037297.
BDGP gene expression has embryonic in situ data for CG1116: 4 pix of staining in 1 body parts.
BioGrid reports that CG1116 interacts with CG18417 CG1851 CG5441 CG6240 .
VDRC has 2 RNAi stocks for FBgn0037297 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	155 ± 1	4 of 4	1.50	Up
Head	108 ± 4	4 of 4	1.10	None
Eye	173 ± 7	4 of 4	1.71	Up
Thoracicoabdominal ganglion	133 ± 3	4 of 4	1.30	Up
Salivary gland	139 ± 7	4 of 4	1.37	Up
Crop	215 ± 8	4 of 4	2.10	Up
Midgut	72 ± 3	4 of 4	0.70	Down
Tubule	64 ± 3	4 of 4	0.60	Down
Hindgut	160 ± 2	4 of 4	1.60	Up
Heart	65 ± 3	4 of 4	0.65	Down
Fat body	76 ± 4	4 of 4	0.75	Down
Ovary	153 ± 3	4 of 4	1.50	Up
Testis	105 ± 2	4 of 4	1.00	None
Male accessory glands	254 ± 5	4 of 4	2.50	Up
Virgin spermatheca	69 ± 4	4 of 4	0.69	Down
Mated spermatheca	78 ± 4	4 of 4	0.77	Down
Adult carcass	80 ± 2	4 of 4	0.80	Down
Larval CNS	151 ± 3	4 of 4	1.49	Up
Larval Salivary gland	259 ± 9	4 of 4	2.55	Up
Larval midgut	69 ± 1	4 of 4	0.68	Down
Larval tubule	111 ± 2	4 of 4	1.10	None
Larval hindgut	91 ± 3	4 of 4	0.89	None
Larval fat body	121 ± 4	4 of 4	1.20	None
Larval trachea	171 ± 2	4 of 4	1.69	Up
Larval carcass	71 ± 7	4 of 4	0.70	Down
S2 cells (growing)	179 ± 3	4 of 4	1.76	Up
Whole fly	101 ± 6	4 of 4

Looking for FBgn0037297. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720