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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037298 through 18771 annotations produced 1 hits



/// (CG2604 /// DsimGD19638):

Annotation Number : CG2604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037298
Gbrowse : chr3R:1047358-1049197 (-) // 100.0 //
Probeset : 1629014_s_at
Accessions : protein= NP_649517; /// NP_730896; /// NP_730897;, nucleotide= NM_141260; /// NM_169029; /// NM_169030;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0037298.
BDGP gene expression has embryonic in situ data for CG2604: 4 pix of staining in 1 body parts.
BioGrid reports that CG2604 interacts with CG3647 CG7997 CG9511 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain170 ± 74 of 4 0.40Down
Head988 ± 354 of 4 2.20Up
Eye422 ± 244 of 4 0.93None
Thoracicoabdominal ganglion227 ± 44 of 4 0.50Down
Salivary gland148 ± 74 of 4 0.33Down
Crop3792 ± 1794 of 4 8.30Up
Midgut194 ± 54 of 4 0.40Down
Tubule115 ± 44 of 4 0.30Down
Hindgut1885 ± 274 of 4 4.10Up
Heart629 ± 164 of 4 1.38Up
Fat body970 ± 94 of 4 2.13Up
Ovary324 ± 64 of 4 0.70Down
Testis175 ± 34 of 4 0.40Down
Male accessory glands276 ± 184 of 4 0.60Down
Virgin spermatheca538 ± 234 of 4 1.18Up
Mated spermatheca509 ± 334 of 4 1.12None
Adult carcass1223 ± 384 of 4 2.70Up
Larval CNS227 ± 214 of 4 0.50Down
Larval Salivary gland322 ± 214 of 4 0.71Down
Larval midgut332 ± 154 of 4 0.73Down
Larval tubule201 ± 74 of 4 0.40Down
Larval hindgut279 ± 184 of 4 0.61Down
Larval fat body752 ± 754 of 4 1.70Up
Larval trachea878 ± 474 of 4 1.93Up
Larval carcass292 ± 254 of 4 0.64Down
S2 cells (growing)90 ± 24 of 4 0.20Down
Whole fly455 ± 184 of 4

Looking for FBgn0037298. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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