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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037304 through 18771 annotations produced 1 hits



/// (CG1113 /// DsecGM10796):

Annotation Number : CG1113
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037304
Gbrowse : chr3R:1079177-1081125 (+) // 100.0 //
Probeset : 1625769_at
Accessions : protein= NP_649522;, nucleotide= NM_141265;
FlyMine data for FBgn0037304.
VDRC has 3 RNAi stocks for FBgn0037304 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 24 of 4 9.10Up
Head8 ± 20 of 4 2.70None
Eye7 ± 20 of 4 2.11None
Thoracicoabdominal ganglion42 ± 44 of 412.70Up
Salivary gland1 ± 00 of 4 0.42Down
Crop2 ± 10 of 4 0.80None
Midgut2 ± 00 of 4 0.70None
Tubule3 ± 00 of 4 1.10None
Hindgut4 ± 10 of 4 1.30None
Heart8 ± 23 of 4 2.39None
Fat body4 ± 20 of 4 1.31None
Ovary1 ± 00 of 4 0.40None
Testis2 ± 10 of 4 0.80None
Male accessory glands4 ± 10 of 4 1.40None
Virgin spermatheca3 ± 10 of 4 1.06None
Mated spermatheca2 ± 10 of 4 0.64None
Adult carcass4 ± 10 of 4 1.20None
Larval CNS9 ± 13 of 4 2.73Up
Larval Salivary gland2 ± 10 of 4 0.66None
Larval midgut2 ± 10 of 4 0.63None
Larval tubule7 ± 21 of 4 2.20None
Larval hindgut2 ± 10 of 4 0.58None
Larval fat body6 ± 20 of 4 1.90None
Larval trachea2 ± 20 of 4 0.72None
Larval carcass23 ± 82 of 4 6.91None
S2 cells (growing)5 ± 10 of 4 1.70None
Whole fly3 ± 00 of 4

Looking for FBgn0037304. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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