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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037305 through 18771 annotations produced 1 hits



(CG12173):

Annotation Number : CG12173
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037305
Gbrowse : chr3R:1081183-1082373 (-) // 100.0 //
Probeset : 1630073_at
Accessions : protein= NP_001163509; /// NP_649523;, nucleotide= NM_001170038; /// NM_141266;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0037305.
BioGrid reports that CG12173 interacts with CG14089 .
VDRC has 2 RNAi stocks for FBgn0037305 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain217 ± 34 of 4 0.80None
Head187 ± 104 of 4 0.70Down
Eye211 ± 74 of 4 0.81None
Thoracicoabdominal ganglion189 ± 94 of 4 0.70Down
Salivary gland132 ± 64 of 4 0.51Down
Crop180 ± 64 of 4 0.70Down
Midgut238 ± 114 of 4 0.90None
Tubule551 ± 264 of 4 2.10Up
Hindgut338 ± 64 of 4 1.30Up
Heart199 ± 114 of 4 0.77Down
Fat body185 ± 74 of 4 0.71Down
Ovary350 ± 84 of 4 1.30Up
Testis106 ± 24 of 4 0.40Down
Male accessory glands176 ± 84 of 4 0.70Down
Virgin spermatheca198 ± 114 of 4 0.76Down
Mated spermatheca186 ± 74 of 4 0.72Down
Adult carcass144 ± 44 of 4 0.60Down
Larval CNS340 ± 114 of 4 1.31Up
Larval Salivary gland156 ± 94 of 4 0.60Down
Larval midgut182 ± 44 of 4 0.70Down
Larval tubule414 ± 214 of 4 1.60Up
Larval hindgut243 ± 74 of 4 0.93None
Larval fat body184 ± 124 of 4 0.70Down
Larval trachea345 ± 334 of 4 1.33Up
Larval carcass160 ± 124 of 4 0.61Down
S2 cells (growing)291 ± 114 of 4 1.12None
Whole fly260 ± 174 of 4

Looking for FBgn0037305. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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