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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037313 through 18771 annotations produced 1 hits



(CG1161):

Annotation Number : CG1161
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037313
Gbrowse : chr3R:1180821-1182467 (+) // 100.0 //
Probeset : 1625650_at
Accessions : protein= NP_001014606; /// NP_649528;, nucleotide= NM_001014606; /// NM_141271;
Pathway : 0016020 // membrane // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation ///
FlyMine data for FBgn0037313.
BDGP gene expression has embryonic in situ data for CG1161: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037313 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain680 114 of 4 1.60Up
Head733 154 of 4 1.70Up
Eye1368 544 of 4 3.15Up
Thoracicoabdominal ganglion784 54 of 4 1.80Up
Salivary gland1107 344 of 4 2.55Up
Crop721 114 of 4 1.70Up
Midgut656 154 of 4 1.50Up
Tubule825 314 of 4 1.90Up
Hindgut881 204 of 4 2.00Up
Heart1007 344 of 4 2.32Up
Fat body783 754 of 4 1.81Up
Ovary399 84 of 4 0.90Down
Testis163 44 of 4 0.40Down
Male accessory glands626 194 of 4 1.40Up
Virgin spermatheca960 414 of 4 2.22Up
Mated spermatheca847 204 of 4 1.95Up
Adult carcass766 34 of 4 1.80Up
Larval CNS461 324 of 4 1.06None
Larval Salivary gland728 344 of 4 1.68Up
Larval midgut627 414 of 4 1.45Up
Larval tubule1348 154 of 4 3.10Up
Larval hindgut748 224 of 4 1.73Up
Larval fat body979 934 of 4 2.30Up
Larval trachea822 354 of 4 1.90Up
Larval carcass652 184 of 4 1.51Up
S2 cells (growing)886 84 of 4 2.04Up
Whole fly433 54 of 4

Looking for FBgn0037313. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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