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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037320 through 18771 annotations produced 1 hits



(CG14668):

Annotation Number : CG14668
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037320
Gbrowse : chr3R:1212366-1213413 (-) // 100.0 //
Probeset : 1640555_at
Accessions : protein= NP_649533;, nucleotide= NM_141276;
FlyMine data for FBgn0037320.
VDRC has 2 RNAi stocks for FBgn0037320 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.10Down
Head4 20 of 4 0.10Down
Eye1 00 of 4 0.03Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland15 50 of 4 0.28Down
Crop6 20 of 4 0.10Down
Midgut13 40 of 4 0.20Down
Tubule5 00 of 4 0.10Down
Hindgut6 20 of 4 0.10Down
Heart1 00 of 4 0.03Down
Fat body9 60 of 4 0.18Down
Ovary2 00 of 4 0.00Down
Testis653 114 of 412.20Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca6 20 of 4 0.12Down
Mated spermatheca11 20 of 4 0.21Down
Adult carcass6 20 of 4 0.10Down
Larval CNS2 10 of 4 0.04Down
Larval Salivary gland8 20 of 4 0.15Down
Larval midgut2 00 of 4 0.04Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut3 10 of 4 0.06Down
Larval fat body52 212 of 4 1.00None
Larval trachea4 40 of 4 0.09Down
Larval carcass4 20 of 4 0.08Down
S2 cells (growing)3 10 of 4 0.07Down
Whole fly53 34 of 4

Looking for FBgn0037320. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime