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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037325 through 18771 annotations produced 1 hits



CKIa-like (CG12147):

Annotation Number : CG12147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037325
Gbrowse : chr3R:1251090-1252979 (-) // 100.0 //
Probeset : 1640964_at
Accessions : protein= NP_649536;, nucleotide= NM_141279;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0037325.
BDGP gene expression has embryonic in situ data for CG12147: 2 pix of staining in 1 body parts.
Homophila reports that CG12147 is a close match (3e-34) to human gene SCA11;TTBK2 (NP_775771), a gene associated with Spinocerebellar ataxia-11, 604432 (3).
VDRC has 3 RNAi stocks for FBgn0037325 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 00 of 4 0.20Down
Head3 ± 10 of 4 0.10Down
Eye3 ± 00 of 4 0.14Down
Thoracicoabdominal ganglion8 ± 10 of 4 0.30Down
Salivary gland22 ± 70 of 4 0.79None
Crop8 ± 01 of 4 0.30Down
Midgut5 ± 20 of 4 0.20Down
Tubule6 ± 00 of 4 0.20Down
Hindgut6 ± 20 of 4 0.20Down
Heart3 ± 10 of 4 0.13Down
Fat body9 ± 60 of 4 0.35Down
Ovary4 ± 10 of 4 0.10Down
Testis332 ± 204 of 411.70Up
Male accessory glands8 ± 31 of 4 0.30Down
Virgin spermatheca2 ± 00 of 4 0.09Down
Mated spermatheca3 ± 10 of 4 0.12Down
Adult carcass9 ± 20 of 4 0.30Down
Larval CNS4 ± 10 of 4 0.14Down
Larval Salivary gland5 ± 10 of 4 0.20Down
Larval midgut4 ± 20 of 4 0.16Down
Larval tubule7 ± 20 of 4 0.30Down
Larval hindgut4 ± 00 of 4 0.16Down
Larval fat body54 ± 243 of 4 1.90None
Larval trachea4 ± 21 of 4 0.15Down
Larval carcass4 ± 10 of 4 0.18Down
S2 cells (growing)3 ± 10 of 4 0.14Down
Whole fly28 ± 14 of 4

Looking for FBgn0037325. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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