Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037332 through 18771 annotations produced 1 hits



CG14670 (Hcs):

Annotation Number : CG14670
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037332
Gbrowse : chr3R:1300623-1311115 (+) // 100.0 //
Probeset : 1640199_at
Accessions : protein= NP_649542;, nucleotide= NM_141285;
Pathway : 0005700 // polytene chromosome // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004077 // biotin-[acetyl-CoA-carboxylase] liga
FlyMine data for FBgn0037332.
BDGP gene expression has embryonic in situ data for CG14670: 8 pix of staining in 1 body parts.
Homophila reports that CG14670 is a close match (1e-67) to human gene HCS;HLCS (NP_000402), a gene associated with Holocarboxylase synthetase deficiency, 253270 (3).
VDRC has 2 RNAi stocks for FBgn0037332 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain253 ± 64 of 4 1.90Up
Head114 ± 94 of 4 0.80None
Eye99 ± 24 of 4 0.72None
Thoracicoabdominal ganglion229 ± 114 of 4 1.70Up
Salivary gland70 ± 34 of 4 0.52Down
Crop90 ± 34 of 4 0.70Down
Midgut80 ± 34 of 4 0.60Down
Tubule139 ± 54 of 4 1.00None
Hindgut72 ± 84 of 4 0.50Down
Heart118 ± 114 of 4 0.87None
Fat body130 ± 64 of 4 0.95None
Ovary335 ± 94 of 4 2.50Up
Testis38 ± 34 of 4 0.30Down
Male accessory glands44 ± 44 of 4 0.30Down
Virgin spermatheca174 ± 174 of 4 1.28None
Mated spermatheca211 ± 34 of 4 1.54Up
Adult carcass90 ± 64 of 4 0.70Down
Larval CNS139 ± 184 of 4 1.02None
Larval Salivary gland66 ± 54 of 4 0.49Down
Larval midgut75 ± 04 of 4 0.55Down
Larval tubule101 ± 54 of 4 0.70None
Larval hindgut100 ± 74 of 4 0.74None
Larval fat body75 ± 124 of 4 0.60Down
Larval trachea88 ± 144 of 4 0.64Down
Larval carcass99 ± 34 of 4 0.73None
S2 cells (growing)39 ± 24 of 4 0.29Down
Whole fly136 ± 144 of 4

Looking for FBgn0037332. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime