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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037338 through 18771 annotations produced 1 hits



mutagen-sensitive 322 (Snm1):

Annotation Number : CG10018
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037338
Gbrowse : chr3R:1380811-1383514 (+) // 100.0 //
Probeset : 1628679_at
Accessions : protein= NP_649548;, nucleotide= NM_141291;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0037338.
BDGP gene expression has embryonic in situ data for Snm1: 4 pix of staining in 1 body parts.
Homophila reports that CG10018 is a close match (2e-13) to human gene ARTEMIS;DCLRE1C;SCIDA (NP_001029027), a gene associated with Omenn syndrome, 603554 (3);Severe combined immunodeficiency, Athabascan type, 602450 (3).
VDRC has 1 RNAi stocks for FBgn0037338 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 04 of 4 0.60Down
Head29 ± 14 of 4 0.30Down
Eye19 ± 14 of 4 0.22Down
Thoracicoabdominal ganglion45 ± 24 of 4 0.50Down
Salivary gland22 ± 31 of 4 0.25Down
Crop22 ± 34 of 4 0.20Down
Midgut43 ± 24 of 4 0.50Down
Tubule19 ± 13 of 4 0.20Down
Hindgut19 ± 14 of 4 0.20Down
Heart18 ± 24 of 4 0.21Down
Fat body24 ± 24 of 4 0.27Down
Ovary241 ± 44 of 4 2.70Up
Testis20 ± 24 of 4 0.20Down
Male accessory glands36 ± 44 of 4 0.40Down
Virgin spermatheca15 ± 20 of 4 0.17Down
Mated spermatheca19 ± 11 of 4 0.22Down
Adult carcass34 ± 31 of 4 0.40Down
Larval CNS78 ± 34 of 4 0.88Down
Larval Salivary gland40 ± 34 of 4 0.45Down
Larval midgut28 ± 24 of 4 0.31Down
Larval tubule31 ± 14 of 4 0.40Down
Larval hindgut28 ± 14 of 4 0.31Down
Larval fat body28 ± 33 of 4 0.30Down
Larval trachea37 ± 24 of 4 0.42Down
Larval carcass26 ± 24 of 4 0.30Down
S2 cells (growing)74 ± 24 of 4 0.83Down
Whole fly89 ± 24 of 4

Looking for FBgn0037338. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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