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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037341 through 18771 annotations produced 1 hits



(CG12746):

Annotation Number : CG12746
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037341
Gbrowse : chr3R:1390838-1393163 (+) // 100.0 //
Probeset : 1630403_s_at
Accessions : protein= NP_649551; /// NP_730949; /// NP_788583;, nucleotide= NM_141294; /// NM_169067; /// NM_176406;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0037341.
BDGP gene expression has embryonic in situ data for CG12746: 16 pix of staining in 7 body parts.
VDRC has 3 RNAi stocks for FBgn0037341 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 ± 64 of 4 1.10Up
Head186 ± 84 of 4 1.60Up
Eye245 ± 134 of 4 2.05Up
Thoracicoabdominal ganglion147 ± 34 of 4 1.20Up
Salivary gland375 ± 164 of 4 3.13Up
Crop2124 ± 1084 of 417.70Up
Midgut300 ± 64 of 4 2.50Up
Tubule531 ± 164 of 4 4.40Up
Hindgut491 ± 94 of 4 4.10Up
Heart238 ± 74 of 4 1.98Up
Fat body239 ± 184 of 4 2.00Up
Ovary85 ± 54 of 4 0.70Down
Testis69 ± 24 of 4 0.60Down
Male accessory glands191 ± 124 of 4 1.60Up
Virgin spermatheca259 ± 244 of 4 2.16Up
Mated spermatheca211 ± 154 of 4 1.76Up
Adult carcass197 ± 94 of 4 1.60Up
Larval CNS53 ± 54 of 4 0.45Down
Larval Salivary gland136 ± 54 of 4 1.14Up
Larval midgut171 ± 174 of 4 1.43None
Larval tubule147 ± 34 of 4 1.20Up
Larval hindgut130 ± 134 of 4 1.09None
Larval fat body57 ± 74 of 4 0.50Down
Larval trachea93 ± 174 of 4 0.78None
Larval carcass80 ± 54 of 4 0.67Down
S2 cells (growing)60 ± 14 of 4 0.50Down
Whole fly120 ± 24 of 4

Looking for FBgn0037341. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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