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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037345 through 18771 annotations produced 1 hits



rev7 (rev7):

Annotation Number : CG2948
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037345
Gbrowse : chr3R:1414664-1415261 (+) // 100.0 //
Probeset : 1637203_at
Accessions : protein= NP_649555;, nucleotide= NM_141298;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037345.
BioGrid reports that CG2948 interacts with CG4795 CG6819 CG32086 CG32381 CG2948 CG10233 CG5352 CG5708 CG4740 CG11182 CG2944 CG2038 CG4335 CG31679 CG18745 CG2865 CG11963 CG18332 CG12723 CG31646 CG1550 CG6521 CG11486 CG3193 CG5009 CG15112 CG6191 CG17309 CG11849 CG10021 CG1957 CG4184 CG13900 CG17964 CG10571 CG8107 CG4057 CG1765 CG13022 CG15781 Dmel CG34324 CG10032 CG18372 CG8181 .
VDRC has 2 RNAi stocks for FBgn0037345 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 ± 24 of 4 1.50Up
Head69 ± 04 of 4 1.20None
Eye71 ± 44 of 4 1.26None
Thoracicoabdominal ganglion106 ± 14 of 4 1.90Up
Salivary gland118 ± 44 of 4 2.08Up
Crop73 ± 34 of 4 1.30Up
Midgut64 ± 34 of 4 1.10None
Tubule66 ± 54 of 4 1.20None
Hindgut101 ± 34 of 4 1.80Up
Heart86 ± 44 of 4 1.51Up
Fat body86 ± 74 of 4 1.51Up
Ovary77 ± 14 of 4 1.30Up
Testis72 ± 34 of 4 1.30Up
Male accessory glands95 ± 14 of 4 1.70Up
Virgin spermatheca39 ± 44 of 4 0.70Down
Mated spermatheca43 ± 24 of 4 0.76Down
Adult carcass71 ± 54 of 4 1.30None
Larval CNS73 ± 84 of 4 1.29Up
Larval Salivary gland87 ± 34 of 4 1.53Up
Larval midgut53 ± 24 of 4 0.94None
Larval tubule147 ± 84 of 4 2.60Up
Larval hindgut111 ± 54 of 4 1.96Up
Larval fat body90 ± 44 of 4 1.60Up
Larval trachea95 ± 94 of 4 1.67Up
Larval carcass49 ± 54 of 4 0.87None
S2 cells (growing)161 ± 64 of 4 2.83Up
Whole fly57 ± 44 of 4

Looking for FBgn0037345. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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