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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037347 through 18771 annotations produced 1 hits



(CG1427):

Annotation Number : CG1427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037347
Gbrowse : chr3R:1427277-1428908 (+) // 100.0 //
Probeset : 1641718_at
Accessions : protein= NP_649556;, nucleotide= NM_141299;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0037347.
BioGrid reports that CG1427 interacts with CG3688 .
TRiP has 1 RNAi stocks for FBgn0037347 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037347 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain213 34 of 4 2.60Up
Head122 54 of 4 1.50Up
Eye183 74 of 4 2.20Up
Thoracicoabdominal ganglion180 84 of 4 2.20Up
Salivary gland165 74 of 4 1.98Up
Crop501 54 of 4 6.00Up
Midgut61 24 of 4 0.70Down
Tubule484 504 of 4 5.80Up
Hindgut321 84 of 4 3.80Up
Heart109 94 of 4 1.31None
Fat body107 64 of 4 1.29Up
Ovary68 34 of 4 0.80Down
Testis103 34 of 4 1.20Up
Male accessory glands114 34 of 4 1.40Up
Virgin spermatheca134 94 of 4 1.60Up
Mated spermatheca139 74 of 4 1.67Up
Adult carcass96 84 of 4 1.10None
Larval CNS140 34 of 4 1.68Up
Larval Salivary gland116 34 of 4 1.39Up
Larval midgut45 24 of 4 0.54Down
Larval tubule104 24 of 4 1.30Up
Larval hindgut85 74 of 4 1.02None
Larval fat body82 24 of 4 1.00None
Larval trachea117 204 of 4 1.40Up
Larval carcass83 94 of 4 1.00None
S2 cells (growing)125 54 of 4 1.51Up
Whole fly83 24 of 4

Looking for FBgn0037347. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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