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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037364 through 18771 annotations produced 1 hits



Rab23 (Rab23):

Annotation Number : CG2108
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037364
Gbrowse : chr3R:1505775-1511148 (-) // 100.0 //
Probeset : 1635643_at
Accessions : protein= NP_649574;, nucleotide= NM_141317;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0037364.
BDGP gene expression has embryonic in situ data for CG2108: 24 pix of staining in 19 body parts.
Homophila reports that CG2108 is a close match (9e-11) to human gene HRAS (NP_789765), a gene associated with Costello syndrome, 218040 (3);{Bladder cancer, somatic}, 109800 (3);{Thyroid carcinoma, follicular, somatic}, 188470 (3).
BioGrid reports that CG2108 interacts with CG9986 .
TRiP has 2 RNAi stocks for FBgn0037364 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037364 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 02 of 4 0.10Down
Head16 ± 14 of 4 0.10Down
Eye34 ± 14 of 4 0.23Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland5 ± 00 of 4 0.04Down
Crop11 ± 31 of 4 0.10Down
Midgut6 ± 30 of 4 0.00Down
Tubule5 ± 10 of 4 0.00Down
Hindgut13 ± 21 of 4 0.10Down
Heart6 ± 11 of 4 0.05Down
Fat body13 ± 40 of 4 0.09Down
Ovary458 ± 94 of 4 3.10Up
Testis3 ± 00 of 4 0.00Down
Male accessory glands10 ± 30 of 4 0.10Down
Virgin spermatheca7 ± 20 of 4 0.05Down
Mated spermatheca7 ± 10 of 4 0.05Down
Adult carcass15 ± 51 of 4 0.10Down
Larval CNS14 ± 34 of 4 0.10Down
Larval Salivary gland9 ± 20 of 4 0.06Down
Larval midgut5 ± 10 of 4 0.04Down
Larval tubule9 ± 01 of 4 0.10Down
Larval hindgut28 ± 14 of 4 0.20Down
Larval fat body5 ± 10 of 4 0.00Down
Larval trachea113 ± 64 of 4 0.78Down
Larval carcass67 ± 34 of 4 0.47Down
S2 cells (growing)18 ± 14 of 4 0.12Down
Whole fly145 ± 84 of 4

Looking for FBgn0037364. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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