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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037369 through 18771 annotations produced 1 hits



(CG2100):

Annotation Number : CG2100
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037369
Gbrowse : chr3R:1560428-1562118 (-) // 100.0 //
Probeset : 1631223_at
Accessions : protein= NP_001163512; /// NP_649578;, nucleotide= NM_001170041; /// NM_141321;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0004652 // polynucleotide adenylyltransferase activity
FlyMine data for FBgn0037369.
BDGP gene expression has embryonic in situ data for CG2100: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 34 of 4 0.40Down
Head93 24 of 4 0.40Down
Eye92 64 of 4 0.43Down
Thoracicoabdominal ganglion94 14 of 4 0.40Down
Salivary gland84 54 of 4 0.39Down
Crop132 44 of 4 0.60Down
Midgut83 14 of 4 0.40Down
Tubule135 34 of 4 0.60Down
Hindgut102 34 of 4 0.50Down
Heart119 134 of 4 0.56Down
Fat body113 124 of 4 0.53Down
Ovary291 24 of 4 1.40Up
Testis567 134 of 4 2.70Up
Male accessory glands178 74 of 4 0.80Down
Virgin spermatheca86 04 of 4 0.40Down
Mated spermatheca96 14 of 4 0.45Down
Adult carcass102 34 of 4 0.50Down
Larval CNS191 54 of 4 0.89Down
Larval Salivary gland85 44 of 4 0.40Down
Larval midgut64 24 of 4 0.30Down
Larval tubule108 24 of 4 0.50Down
Larval hindgut118 04 of 4 0.55Down
Larval fat body140 294 of 4 0.70None
Larval trachea171 104 of 4 0.80Down
Larval carcass114 74 of 4 0.53Down
S2 cells (growing)122 64 of 4 0.57Down
Whole fly214 74 of 4

Looking for FBgn0037369. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime