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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037372 through 18771 annotations produced 1 hits



(CG2091):

Annotation Number : CG2091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037372
Gbrowse : chr3R:1579039-1580495 (-) // 100.0 //
Probeset : 1632438_at
Accessions : protein= NP_649582;, nucleotide= NM_141325;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from ele
FlyMine data for FBgn0037372.
BDGP gene expression has embryonic in situ data for CG2091: 11 pix of staining in 4 body parts.
BioGrid reports that CG2091 interacts with CG7890 CG8865 CG2168 Dmel CG33715 .
VDRC has 2 RNAi stocks for FBgn0037372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 24 of 4 0.80Down
Head56 34 of 4 0.40Down
Eye73 44 of 4 0.57Down
Thoracicoabdominal ganglion96 24 of 4 0.80Down
Salivary gland60 44 of 4 0.47Down
Crop52 44 of 4 0.40Down
Midgut52 34 of 4 0.40Down
Tubule47 24 of 4 0.40Down
Hindgut49 14 of 4 0.40Down
Heart44 24 of 4 0.35Down
Fat body38 74 of 4 0.30Down
Ovary252 64 of 4 2.00Up
Testis25 24 of 4 0.20Down
Male accessory glands73 44 of 4 0.60Down
Virgin spermatheca47 24 of 4 0.37Down
Mated spermatheca50 54 of 4 0.39Down
Adult carcass40 44 of 4 0.30Down
Larval CNS215 134 of 4 1.68Up
Larval Salivary gland129 84 of 4 1.01None
Larval midgut45 24 of 4 0.35Down
Larval tubule117 54 of 4 0.90None
Larval hindgut77 34 of 4 0.61Down
Larval fat body58 54 of 4 0.50Down
Larval trachea123 184 of 4 0.96None
Larval carcass57 44 of 4 0.45Down
S2 cells (growing)103 24 of 4 0.81Down
Whole fly128 34 of 4

Looking for FBgn0037372. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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