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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037374 through 18771 annotations produced 2 hits



jagunal (jagn):

Annotation Number : CG10978
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037374
Gbrowse : chr3R:1605030-1607030 (+) // 100.0 //
Probeset : 1640445_at
Accessions : protein= NP_649585; /// NP_731002;, nucleotide= NM_141328; /// NM_169103;
Pathway : nurse cell to oocyte // non-traceable author statement /// 0008407 // bristle morphogenesis // inferred from mutant phe
Interpro : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
FlyMine data for FBgn0037374.
BDGP gene expression has embryonic in situ data for CG10978: 12 pix of staining in 7 body parts.
BioGrid reports that CG10978 interacts with CG16853 .
VDRC has 1 RNAi stocks for FBgn0037374 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain394 124 of 4 1.30Up
Head273 114 of 4 0.90None
Eye185 94 of 4 0.63Down
Thoracicoabdominal ganglion412 54 of 4 1.40Up
Salivary gland598 394 of 4 2.04Up
Crop607 104 of 4 2.10Up
Midgut465 64 of 4 1.60Up
Tubule398 74 of 4 1.40Up
Hindgut283 54 of 4 1.00None
Heart550 214 of 4 1.88Up
Fat body679 384 of 4 2.32Up
Ovary379 94 of 4 1.30Up
Testis91 74 of 4 0.30Down
Male accessory glands329 154 of 4 1.10None
Virgin spermatheca612 144 of 4 2.09Up
Mated spermatheca797 304 of 4 2.72Up
Adult carcass429 224 of 4 1.50Up
Larval CNS383 124 of 4 1.31Up
Larval Salivary gland936 304 of 4 3.20Up
Larval midgut534 224 of 4 1.82Up
Larval tubule381 54 of 4 1.30Up
Larval hindgut379 54 of 4 1.29Up
Larval fat body645 574 of 4 2.20Up
Larval trachea586 284 of 4 2.00Up
Larval carcass776 554 of 4 2.65Up
S2 cells (growing)577 24 of 4 1.97Up
Whole fly292 254 of 4



jagunal (jagn):

Annotation Number : CG10978
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037374
Gbrowse : chr3R:1605030-1606488 (+) // 100.0 //
Probeset : 1630668_a_at
Accessions : protein= NP_649585; /// NP_731002;, nucleotide= NM_141328; /// NM_169103;
Pathway : nurse cell to oocyte // non-traceable author statement /// 0008407 // bristle morphogenesis // inferred from mutant phe
Interpro : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
FlyMine data for FBgn0037374.
BDGP gene expression has embryonic in situ data for CG10978: 12 pix of staining in 7 body parts.
BioGrid reports that CG10978 interacts with CG16853 .
VDRC has 1 RNAi stocks for FBgn0037374 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain188 44 of 4 1.30Up
Head105 94 of 4 0.70Down
Eye67 24 of 4 0.48Down
Thoracicoabdominal ganglion129 104 of 4 0.90None
Salivary gland172 54 of 4 1.22Up
Crop202 114 of 4 1.40Up
Midgut200 74 of 4 1.40Up
Tubule84 34 of 4 0.60Down
Hindgut149 24 of 4 1.10None
Heart254 74 of 4 1.80Up
Fat body223 404 of 4 1.58Up
Ovary191 24 of 4 1.40Up
Testis100 54 of 4 0.70Down
Male accessory glands106 74 of 4 0.80Down
Virgin spermatheca36 04 of 4 0.26Down
Mated spermatheca42 24 of 4 0.30Down
Adult carcass204 104 of 4 1.40Up
Larval CNS131 104 of 4 0.93None
Larval Salivary gland290 394 of 4 2.06Up
Larval midgut115 54 of 4 0.82Down
Larval tubule134 44 of 4 1.00None
Larval hindgut111 64 of 4 0.79Down
Larval fat body156 134 of 4 1.10None
Larval trachea229 204 of 4 1.63Up
Larval carcass237 294 of 4 1.69Up
S2 cells (growing)342 44 of 4 2.43Up
Whole fly141 54 of 4

Looking for FBgn0037374. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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