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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037377 through 18771 annotations produced 1 hits



(CG1218):

Annotation Number : CG1218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037377
Gbrowse : chr3R:1617607-1619106 (+) // 100.0 //
Probeset : 1639168_at
Accessions : protein= NP_649589;, nucleotide= NM_141332;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037377.
BDGP gene expression has embryonic in situ data for CG1218: 15 pix of staining in 15 body parts.
BioGrid reports that CG1218 interacts with CG12375 CG9784 .
TRiP has 1 RNAi stocks for FBgn0037377 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037377 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 14 of 4 0.60Down
Head49 44 of 4 0.40Down
Eye35 14 of 4 0.28Down
Thoracicoabdominal ganglion56 44 of 4 0.50Down
Salivary gland63 54 of 4 0.51Down
Crop60 54 of 4 0.50Down
Midgut55 34 of 4 0.40Down
Tubule61 54 of 4 0.50Down
Hindgut51 24 of 4 0.40Down
Heart55 24 of 4 0.44Down
Fat body48 24 of 4 0.38Down
Ovary233 64 of 4 1.90Up
Testis40 24 of 4 0.30Down
Male accessory glands48 44 of 4 0.40Down
Virgin spermatheca40 34 of 4 0.32Down
Mated spermatheca54 14 of 4 0.43Down
Adult carcass51 24 of 4 0.40Down
Larval CNS155 54 of 4 1.24Up
Larval Salivary gland98 54 of 4 0.79Down
Larval midgut55 44 of 4 0.44Down
Larval tubule66 24 of 4 0.50Down
Larval hindgut66 54 of 4 0.53Down
Larval fat body50 44 of 4 0.40Down
Larval trachea80 64 of 4 0.64Down
Larval carcass44 24 of 4 0.36Down
S2 cells (growing)98 24 of 4 0.79Down
Whole fly125 64 of 4

Looking for FBgn0037377. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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