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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037379 through 18771 annotations produced 1 hits



(CG10979):

Annotation Number : CG10979
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037379
Gbrowse : chr3R:1620425-1624348 (+) // 100.0 //
Probeset : 1627666_at
Accessions : protein= NP_649591;, nucleotide= NM_141334;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037379.
BioGrid reports that CG10979 interacts with CG18135 CG11275 CG11964 CG12521 CG15224 CG15505 CG15632 CG15634 CG1829 CG1841 CG31482 CG3193 CG31958 CG33156 CG4570 CG4697 CG5433 CG5717 CG5930 CG6617 CG8198 CG8936 CG8997 CG9573 .
TRiP has 1 RNAi stocks for FBgn0037379 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037379 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 ± 14 of 4 0.60Down
Head29 ± 24 of 4 0.30Down
Eye24 ± 14 of 4 0.26Down
Thoracicoabdominal ganglion32 ± 24 of 4 0.30Down
Salivary gland38 ± 53 of 4 0.41Down
Crop53 ± 34 of 4 0.60Down
Midgut63 ± 34 of 4 0.70Down
Tubule23 ± 03 of 4 0.20Down
Hindgut49 ± 14 of 4 0.50Down
Heart17 ± 04 of 4 0.19Down
Fat body27 ± 54 of 4 0.30Down
Ovary208 ± 64 of 4 2.20Up
Testis106 ± 34 of 4 1.10None
Male accessory glands30 ± 54 of 4 0.30Down
Virgin spermatheca8 ± 00 of 4 0.09Down
Mated spermatheca12 ± 10 of 4 0.13Down
Adult carcass31 ± 33 of 4 0.30Down
Larval CNS45 ± 54 of 4 0.49Down
Larval Salivary gland45 ± 34 of 4 0.49Down
Larval midgut34 ± 32 of 4 0.37Down
Larval tubule159 ± 34 of 4 1.70Up
Larval hindgut37 ± 34 of 4 0.40Down
Larval fat body73 ± 74 of 4 0.80None
Larval trachea22 ± 74 of 4 0.24Down
Larval carcass27 ± 04 of 4 0.29Down
S2 cells (growing)194 ± 144 of 4 2.09Up
Whole fly93 ± 74 of 4

Looking for FBgn0037379. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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