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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037385 through 18771 annotations produced 1 hits


globin 3 (glob3):

Annotation Number : CG14675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037385
Gbrowse : chr3R:1655878-1657072 (+) // 100.0 //
Probeset : 1635141_at
Accessions : protein= NP_649597;, nucleotide= NM_141340;
Interpro : 0005506 // iron ion binding // inferred from electronic annotation /// 0019825 // oxygen binding // inferred from electr
FlyMine data for FBgn0037385.
TRiP has 1 RNAi stocks for FBgn0037385 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037385 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.20Down
Salivary gland9 ± 41 of 4 0.37Down
Crop5 ± 00 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.12Down
Fat body4 ± 30 of 4 0.18Down
Ovary0 ± 00 of 4 0.00Down
Testis223 ± 134 of 4 9.00Up
Male accessory glands3 ± 20 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.06Down
Mated spermatheca2 ± 10 of 4 0.09Down
Adult carcass6 ± 10 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.06Down
Larval Salivary gland1 ± 00 of 4 0.07Down
Larval midgut1 ± 00 of 4 0.06Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.08Down
Larval fat body33 ± 133 of 4 1.30None
Larval trachea0 ± 00 of 4 0.02Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly24 ± 34 of 4

Looking for FBgn0037385. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime